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Efficient Skeleton Editing in a VR Environment Facilitates Accurate Modeling of Highly Branched Mitochondria.

Published online by Cambridge University Press:  30 July 2020

Ryan Conrad
Affiliation:
National Cancer Institute, NIH & Frederick National Laboratory for Cancer Research, Frederick, Maryland, United States
Thomas Ruth
Affiliation:
arivis AG, Rostock, Mecklenburg-Vorpommern, Germany
Falko Löffler
Affiliation:
arivis AG, Rostock, Mecklenburg-Vorpommern, Germany
Steffen Hadlak
Affiliation:
arivis AG, Rostock, Mecklenburg-Vorpommern, Germany
Sebastian Konrad
Affiliation:
arivis AG, Rostock, Mecklenburg-Vorpommern, Germany
Christian Götze
Affiliation:
arivis AG, Rostock, Mecklenburg-Vorpommern, Germany
Christopher Zugates
Affiliation:
arivis inc., Washington, District of Columbia, United States
Molly McQuilken
Affiliation:
arivis inc., Washington, District of Columbia, United States
Kedar Narayan
Affiliation:
National Cancer Institute, NIH & Frederick National Laboratory for Cancer Research, Frederick, Maryland, United States

Abstract

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Type
Advances in Modeling, Simulation, and Artificial Intelligence in Microscopy and Microanalysis for Physical and Biological Systems
Copyright
Copyright © Microscopy Society of America 2020

References

Vincent, A. E., White, K., Davey, T., Taylor, R. W., Turnbull, D. M., & Picard, M. (2019). Quantitative 3D Mapping of the Human Skeletal Muscle Mitochondrial Network. Cell Reports 26(4), 9961009.10.1016/j.celrep.2019.01.010CrossRefGoogle ScholarPubMed
Kasthuri, N., Hayworth, K. J., Berger, D. R., Schalek, R. L., Conchello, J. A., Knowles-Barley, S., … Lichtman, J. W. (2015). Saturated Reconstruction of a Volume of Neocortex. Cell 162(3), 648–66.10.1016/j.cell.2015.06.054CrossRefGoogle ScholarPubMed
Tagliasacchi, A., Delame, T., Spagnuolo, M., Amenta, N., Alexandru, T. (2016) 3D Skeletons: A State-of-the-Art Report. Computer Graphics Forum 35 (2), 573597.10.1111/cgf.12865CrossRefGoogle Scholar
Göbel, M., Müller, H., Urban, B. (1995): Visualization in scientific computing. Springer-Verlag.Google Scholar
Huisken, J., Swoger, F., Del Bene, J., Wittbrodt, E., Stelzer, H. (2004). Optical sectioning deep inside live embryos by selective plane illumination microscopy. Science 305(5686), 10071009.10.1126/science.1100035CrossRefGoogle ScholarPubMed
Costantini, M., Ambrosini, E., Scorolli, C., et al. (2011). When objects are to close to me: Affordances in the peripersonal space. Psychon Bull Rev 18, 302.10.3758/s13423-011-0054-4CrossRefGoogle ScholarPubMed
Löffler, F., Bönisch, B., Götze, C., Suchanek, A.: Direct Volume Rendering in Virtual and/or Augmented Reality, 20170109935. Filed: October 17, 2016 & issued April 20, 2017; 10319147. Filed October 17, 2016 & issued June 11, 2019; 20190272027. Filed May 21, 2019 & issued Spetember 5, 2019.Google Scholar
Wang, Y., et al. (2019) TeraVR empowers precise reconstruction of complete 3-D neuronal morphology in the whole brain. Nature communications 10, 3474.10.1038/s41467-019-11443-yCrossRefGoogle ScholarPubMed
Rahman, M., Chang, I. Y., Harned, A., Maheshwari, R., Amoateng, K., Narayan, K., & Cohen-Fix, O. (2020). C. elegans pronuclei fuse after fertilization through a novel membrane structure. The Journal of Cell Biology. 219(2), e201909137.10.1083/jcb.201909137CrossRefGoogle ScholarPubMed
van der Walt, Stéfan, Schönberger, Johannes L., Nunez-Iglesias, Juan, Boulogne, François, Warner, Joshua D., Yager, Neil, Gouillart, Emmanuelle, Yu, Tony and the scikit-image contributors. (2014). scikit-image: Image processing in Python. PeerJ 2, e453.10.7717/peerj.453CrossRefGoogle ScholarPubMed