The land crab Cardisoma guanhumi populations have been on the decline in Puerto Rico for the last three decades. While some studies suggest overexploitation and pesticides as causing the observed population declines, the effect of land-use/land-cover (LULC) changes have not been investigated. In this study we compared the abundance and size of Cardisoma guanhumi in five different LULC types (mangroves, grasslands, forest, urban and industrial), and investigated the relationship between differences in physical microhabitat conditions among the LULC types with crab abundance and size. Although no significant differences in size were found among the different LULC types, crabs were significantly less abundant in grassland sites. Surface soil temperature, depth to groundwater and air temperature were found to vary significantly among the LULC types. Of these, only surface soil temperatures had a significant negative relationship with crab abundance. It appears that high variation in soil temperature and a high groundwater table observed in the grasslands is most detrimental to crabs. Interestingly, during the time when land crab populations declined there was corresponding change of LULC from agriculture to grasslands. Cardisoma guanhumi is resilient to changes in LULC, however, changes that alter their access to groundwater and escape from high soil temperature reduce their habitat.

Six rhizotrons in an Eucalyptus tetrodonta savanna revealed seasonal changes in the abundance of fine roots (≤ 5 mm diameter). Fine roots were almost completely absent from the upper 1 m of soil during the dry season, but proliferated after the onset of wet-season rains. At peak abundance of 3.9 kg m−2 soil surface, fine roots were distributed relatively uniformly throughout 1 m depth, in contrast with many tropical savannas and tropical dry forests in which fine roots are most abundant near the soil surface. After 98% of cumulative annual rainfall had been received, fine roots began to disappear rapidly, such that 76 d later, less than 5.8% of peak abundance remained. The scarcity of fine roots in the upper 1 m of soil early in the dry season suggests that evergreen trees may be able to extract water from below 1 m throughout the dry season. Persistent deep roots together with abundant fine roots in the upper 1 m of soil during the wet season constitute a ‘dual’ root system. Deep roots might buffer atmospheric CO2 against increase by sequestering carbon at depth in the soil.

Although it is well known that riparian zones can contribute strongly to between-habitat beta diversity, for most taxa it is not clear how far this ‘zone’ extends, and whether it corresponds to easily recognizable topographic features. Forty 200-m2 plots were installed in a terra firme tropical forest to detect compositional variation in terrestrial herbs from the margins of small streams to the uplands. Plots were ordinated by their dissimilarity in species composition with non-metric multidimensional scaling. The riparian zone around streams was distinct in understorey herb composition from upland areas for about 100 m from the streams, or about 70 m asl in elevation, the exact distance depending on the size of the stream valley. However, the only assemblage that was almost completely distinct occurred as a narrow band a few metres wide along the streams. The rest of the riparian zone appears to represent an ecotone with continuous change, most of which occurs out to a distance of about half the width of the riparian zone as we defined it. Although riparian zones are legally protected in Brazil, they are frequently degraded. The complex factors leading to zonation around streams need to be understood to effectively manage these areas.

As top predators, wild cats play a key ecological role in tropical forests, but little is known about the factors that regulate their abundance. This study looked for correlates of ocelot (Leopardus pardalis) abundance at two spatial scales. First, camera-trap surveys conducted in the Atlantic Forest of Misiones, Argentina, were used to test the hypothesis that selective logging and poaching affect the local abundance of this cat. Second, published density estimates (N = 21) were used to test the hypothesis that rainfall and latitude are correlated with the abundance of ocelots across their continental range. In Misiones, ocelot densities ranged from 4.96 ± 1.33 individuals per 100 km2 in the intensely logged and hunted areas to 17.6 ± 2.25 individuals per 100 km2 in areas with low human impact. The frequency of records, number of individuals recorded per station, and density estimates were 2–3 times higher in areas with relatively low levels of logging and poaching. At a continental scale, ocelot densities decrease with latitude and increase with rainfall. Primary productivity seems to determine the abundance of wild cats across their range, but at a local scale their abundance may be affected by logging and poaching or by competition with other species.

One manner in which elephants utilize trees is by removing their bark. This type of utilization is concentrated on the largest trees in the landscape. The role of bark removal in increasing the vulnerability of large trees to fire and the mechanism through which fire damage is mediated were investigated in Kruger National Park, South Africa, by experimentally removing bark and burning Acacia nigrescens stems with diameters ranging between 30 and 68 mm. Also, field surveys were conducted subsequent to natural fires in order to investigate mortality patterns of large trees with dbh greater than 15 cm with bark removed by elephants. An increasing probability of mortality was associated with increasing amounts of bark removal but only if trees were burned. When trees had bark removed but were not burnt, simulating damage only to cambium and phloem, none of the 12 treated stems died in the 4-mo period over which the experiment ran. Moreover, low levels of cambium damage were detected in large burned stems. This suggests that bark removal increases fire-induced xylem damage and that this damage contributes towards stem mortality. In a survey of 437 large trees, bark removal by elephants was frequent on large stems (44%) and larger trees have greater amounts of bark removed. Post-fire mortality of large trees was significantly associated with increasing bark removal and stem diameter. These results indicate that bark removal by elephants increases the vulnerability of stems to fire, resulting in mortality of large stems otherwise protected from fire.

Habitat alteration can have far-reaching consequences for natural communities and can alter existing species interactions in profound ways. Working in a tropical dry forest ecosystem in the Guanacaste Province of Costa Rica, we measured seed removals and seed dispersal distances for Acacia collinsii and papaya seeds to determine if habitat disturbance affects ant community composition and the associated interactions between ants and seeds. Two hundred and forty experimental seed depots were observed in four sites that differed in land-use history and disturbance severity: secondary forest, forest edge, Acacia collinsii edge, and open-pasture. Both seed removals and average dispersal distances achieved by ants differed among habitats. Habitat disturbance did not negatively affect seed removals by ants in our study; seed removals were highest in the most disturbed habitat, the open pasture (38.3% of seeds removed within 2 h). Ant community composition and the relative abundance of key seed dispersers also differed among habitats. In all sites combined, ten species of ant were observed dispersing seeds, with two species, Pheidole fallax and Ectatomma ruidum, in combination being responsible for 92% of all observed seed removals. The abundance of P. fallax and E. ruidum differed among habitats, with E. ruidum being the most abundant ant species collected in the open-pasture habitat and P. fallax being the most abundant in the edge habitats. Pheidole fallax ants dispersed seeds significantly further (mean ± SD = 2.11 ± 1.35 m, maximum = 5.2 m) than did E. ruidum (mean ± SD = 0.7 ± 0.81 m, maximum = 3.85 m), a difference we attribute to recruitment behaviour and not body size. Habitat disturbance thus alters the ant community and the relative abundance of key seed-dispersing ant species, with cascading effects on seed removals and seed dispersal distances.

Spatial distribution patterns and habitat associations of Fagaceae species in a Fagaceae-codominated hill forest in Sumatra were investigated. Ten Fagaceae species believed to be zoochorous (animal-dispersed seed) and five codominant canopy and emergent anemochorous (wind-dispersed seed) species from Anacardiaceae and Dipterocarpaceae were studied. Five Fagaceae species and all codominant anemochorous species were significantly aggregated while the other five Fagaceae species showed a random distribution pattern. The median distance of small saplings from the nearest reproductively mature tree tended to be shorter for aggregated species than spatially random species. This implied that some Fagaceae species dispersed over longer distances than anemochorous species. Relationships between four habitat variables and distribution of the target species were examined with torus-translation tests. Three Quercus and one Lithocarpus species showed positive habitat associations. Two Quercus species aggregated at the preferred habitat, but the others were randomly distributed. Thus tree species with specific habitat preference do not only aggregate at the preferred habitat. The three ridge-specialist Quercus species showed gradual changes in habitat association, which could reflect avoidance of competition among the species. Most of the Lithocarpus species showed little correlation with habitat variables. Coexistence of the three Quercus species partly reflected subtle differences in topographical preferences. Distribution of five of the six Lithocarpus species was unrelated to topography, so other mechanisms must be sought to account for the maintenance of coexistence in this species-rich genus.

There are two trade-offs at the levels of leaves and crowns, i.e. assimilation capacity per leaf mass is greater for shorter-lived leaves, and unbranched species grow faster in height by allocating carbon more to trunk than to leaves and branches compared with highly branched species. The hypotheses were tested that the degree of branching (LTB) correlates with leaf traits and that height growth rate is negatively correlated with the degree of branching and leaf life span (LLS) by examining saplings of five canopy and subcanopy species, two shrub species and one invasive subshrub species (Clidemia hirta) in a tropical rain forest, West Java, Indonesia. Of the eight species, the most and least branched species were Castanopsis acuminatissima and Macaranga semiglobosa, respectively. Leaf traits examined were leaf size, LLS, leaf mass per area (LMA), leaf nitrogen concentration per mass (Nmass) and per area. LLS tended to be positively correlated with LMA, and negatively correlated with Nmass. Leaf size was negatively correlated with LTB, but the other leaf traits were not correlated with LTB. The height growth of the eight species was low, irrespective of LTB and LLS, for understorey individuals. The height growth of gap individuals was negatively correlated with LLS for the eight species, and also negatively with LTB for the seven species other than one subshrub species. Thus, the degree of branching was correlated with leaf size only among the five leaf traits, and both leaf life span and the degree of branching affected the height growth of gap individuals, except for the subshrub species.

Soil processes are essential in enabling forest regeneration in disturbed landscapes. Little is known about whether litterfall from dominating pioneer species in secondary rain forest is functionally equivalent to that of mixed rain-forest litter in terms of contribution to soil processes. This study used the litterbag technique to quantify the decomposition and nutrient dynamics of leaf litter characteristic of three wet tropical forest communities in the Paluma Range National Park, Queensland, Australia over 511 d. These were: undisturbed primary rain forest (mixed rain-forest species), selectively logged secondary rain forest (pioneer Alphitonia petriei) and tall open eucalypt forest (Eucalyptus grandis). Mass loss, total N, total P, K, Ca and Mg dynamics of the decaying leaves were determined, and different mathematical models were used to explain the mass loss data. Rainfall and temperature data were also collected from each site. The leaves of A. petriei and E. grandis both decomposed significantly slower in situ than the mixed rain-forest species (39%, 38% and 29% ash-free dry mass remaining respectively). Nitrogen and phosphorus were immobilized, with 182% N and 134% P remaining in E. grandis, 127% N and 132% P remaining in A. petriei and 168% N and 121% P remaining in the mixed rain-forest species. The initial lignin:P ratio and initial lignin:N ratio exerted significant controls on decomposition rates. The exceptionally slow decomposition of the pioneer species is likely to limit soil processes at disturbed tropical rain-forest sites in Australia.

Edge effects encompass biotic and abiotic changes resulting from the interaction between two different habitat types (Murcia 1995). Edge habitats are ecologically distinct from patch interiors, and understanding how ecological patterns change near edges is important in understanding landscape-level dynamics such as the impacts of fragmentation (Ries et al. 2004). Abiotic conditions at the forest edge, such as increased wind and solar radiation, increased fluctuations in temperature, and decreased humidity, may affect forest-adapted organisms (Harper et al. 2005, Murcia 1995). So, edges may affect lizards and amphibians due to their physiological needs (Lehtinen et al. 2003, Vallan 2000). Anurans are considered sensitive to environmental changes due to their permeable skin, shell-less eggs and use of land as well as freshwater habitats (Vallan 2000). Changes in vegetation structure and microclimate are likely to be the predominant factor affecting amphibian abundances across edges (Jellinek et al. 2004, Marsh & Pearman 1997, Schaepfer & Gavin 2001, Urbina-Cardona et al. 2006).

Seed dispersal is the first stage of colonization, and potentially affects recruitment. This process deserves more attention in tropical montane cloud forests (TMCF), since secondary succession is common owing to episodic disturbances. We studied annual seed rain in 10 nearby forest stands, ≈7 to ≈100 y following shifting agriculture, and one primary forest stand in southern Mexico to test the hypothesis that seed rain is limited at the scale of neighbouring fragments and that such limitation differs among species with different dispersal modes and successional origin. Annual seed rain was heterogeneous among forest fragments probably due to the prevalence of local seed dispersal, differences in stand age and the proportion of zoochory, and may help explain the patchy distribution of species observed in TMCF. Seed rain abundance and species diversity per unit trap area increased with the age of the stand. Biotically dispersed seeds increased towards older stands relative to abiotically dispersed seeds. Late-successional seeds were rarer in early successional stands than pioneer seeds in late-successional stands, suggesting that long-distance dispersal is generally more common for pioneer plants. Seed dispersal appears to constrain forest regeneration and to influence fragment species composition as a function of the distance from the source forests.

Understanding how species assemblages are structured in relation to environmental variation is a central issue in community ecology. However, factors that create regional variation in relative species abundances have been little studied due to the rarity of large-scale datasets. Here, we investigated a large dataset (30 180 0.5-ha plots spread over 1 600 000 ha) gathered from forest planning inventories in the semi-deciduous forest of the south western Central African Republic. We used Correspondence Analysis and Non-Symmetric Correspondence Analysis on Instrumental Variables to analyse variation in the abundance of 73 common tree species in relation to soil type, rainfall and proximity to villages. Together, environmental variables explained 10.3% of multi-species floristic variation among plots, and the regional spatial structure almost disappeared when the effects of these variables were removed. A Trend Surface Analysis using a third order polynomial function of the geographical coordinates of the plots explained 14.5% of the floristic variation and more than 75% of this variation was explained by environmental variables. Sandy soil was the most influential factor affecting floristic composition. Residual spatial variation not explained by the environmental variables probably reflects the natural and anthropogenic history of the vegetation.

We examined the seasonal and inter-annual variation of leaf-level photosynthetic characteristics of three C4 perennial species, Cyperus articulatus, Panicum repens and Imperata cylindrica, and their response to environmental variables, to determine comparative physiological responses of plants representing particular microhabitats within a seasonal tropical floodplain in the Okavango River Delta, Botswana. Five measurement campaigns were carried out over a period of 2 y which covered two early rainy seasons, two late rainy seasons and one dry season. For all three species, light-saturated net photosynthetic rates (Asat) and stomatal conductance (gsat) decreased with decreasing soil water content with a seasonal range for Asat of approximately 5–45 μmol m−2 s−1, and for gsat of 0.03–0.35 mol m−2 s−1. The species representing the wettest microhabitat (Cyperus) had the highest gsat at low leaf-to-air vapour pressure deficits (Dl), the highest ratio of intercellular to ambient CO2 concentration (Ci/Ca), as well as the highest degree of variation in Ci/Ca from season to season. We interpret this as being indicative of its adaptation to a moist growth environment allowing for non-conservative water use strategies as soil moisture is usually abundant. For all three species there was significant variation in photosynthetic fluxes from one year to another that was related to variation in leaf nitrogen and phosphorus. This study shows that when assessing the role of savanna stands in large-scale carbon balance models, the remarkable inter-annual variation in leaf photosynthesis reported in this study should be taken into account.

Although levels of parasitism can vary greatly among individual bats of the same species, little is known about the characteristics of hosts that affect such variation. Bats were captured via mist nets from June 1995 to July 1997 from 28 localities throughout Paraguay. Over 17 500 ectoparasites were collected from 2909 bats; however, analyses of ectoparasite abundance were restricted to more abundant taxa of host and ectoparasite. We quantified the abundances of 29 taxa of ectoparasite on 19 species of bat host, as well as total abundance of ectoparasites regardless of taxonomic affiliation for 22 species of bat from Paraguay. The effects of host sex and host body size on these estimates of ectoparasite abundance were evaluated separately for each species of host. Ectoparasites did not respond consistently to host body size: ectoparasite abundance increased with host body size in 12 instances and decreased with host body size in 11 instances. Regardless of the existence or direction of effects of host body size on ectoparasite abundance, female hosts generally harboured more ectoparasites than did male hosts. Differences in host quality associated with the sex of bats, especially those related to behaviour, may be a more important determinant of ectoparasite abundance than are differences in size. Opportunities for host transfer are critical for species persistence of ectoparasites; consequently, ectoparasite populations on host individuals that form social groups or colonies should be larger, less prone to stochastic extinction, and have greater opportunity for speciation.

The objective of this study was to determine the effects of gall induction on leaf phenolic compounds and their indirect effects on the subsequent attack of folivorous insects in Achatocarpus gracilis, Cordia alliodora, Guapira macrocarpa, Guettarda elliptica and Ruprechtia fusca that occur in both hillside and riparian sites at Chamela-Cuixmala tropical dry forest in western Mexico. There are differences in soil water content between riparian and hillside sites where trees in the first are mainly evergreen and deciduous in the second. A few tree species occur in both sites and their intraspecific phenological response is also different between sites. In this case, trees of a given species that occur in riparian sites will be evergreen whereas trees on hillsides of the same species will be deciduous. Four plant species had significantly greater total phenol concentrations in galled than ungalled leaves in both deciduous hillside and riparian sites. In three plant species associated with galls, host total phenol concentrations were significantly greater in short than in tall plants. The frequency and amount of folivore damage were greater in leaves without galls than leaves with galls in these four plant species. These results indicate that galling insect species may directly affect leaf phenolic concentrations and indirectly may affect the incidence and consumption of folivorous insects in tropical plant species. This may have important consequences on the preference of leaves by folivorous insects that might be excluded by galling insect species in this dry tropical system.

Seed predation by native and alien rodents can limit plant recruitment and ultimately affect forest dynamics and composition (Campbell & Atkinson 2002, Côté et al. 2003, Hulme 1998, Sánchez-Cordero & Martínez-Gallardo 1998). Even partial consumption of seeds by predators may affect plant community structure, though its importance is poorly understood (Steele et al. 1993, Vallejo-Marín et al. 2006). Despite consumption of relatively large portions of seeds by herbivores, seeds can retain their ability to germinate if the embryo remains intact (Dalling & Harms 1999, Janzen 1972, Mack 1998). Germination of damaged seeds may be accelerated or prolonged (Karban & Lowenberg 1992, Koptur 1998, Vallejo-Marín et al. 2006). Damage by seed pests also facilitates ageing stress; which manifests as decreased seedling vigour, decreased seed viability, lower germination percentages and slower germination rates (Priestley 1986).

We investigated spatial distribution of lianas, and examined relationships between distribution and topography in a secondary forest on the northern part of the main island of Okinawa, south-west Japan. All lianas with a stem diameter exceeding 2 cm at a point 1.3 m from the root were inventoried, and stem diameter and root position were measured within a small watershed (16.0625 ha). Geographical information systems (GIS) were used to divide the watershed into 257 cells in total, each cell being 25 m × 25 m. Three topographic parameters were measured in each cell: slope angle, slope aspect and relief. In total, 930 stems from 20 species of lianas were recorded. Distribution of all liana stems and 14 of 15 species analysed were biased toward concave sites. Abundance of total lianas was higher in concave sites than in convex sites. Our results suggest that distribution and abundance of lianas are strongly affected by topography, and that lianas tend to be distributed in sites with more water and nutrients, which are formed by relief in the Okinawa forest. Factors affecting stem density differed among species.

In mixed tropical landscapes, savanna and rain-forest vegetation often support contrasting biotas, and this is the case for ant communities in tropical Australia. Such a contrast is especially pronounced in monsoonal north-western Australia, where boundaries between rain forest and savanna are often extremely abrupt. However, in the humid tropics of north-eastern Queensland there is often an extended gradient between rain forest and savanna through eucalypt-dominated tall open forest. It is not known if ant community structure varies continuously along this gradient, or, if there is a major disjunction, where it occurs. We address this issue by sampling ants at ten sites distributed along a 6-km environmental gradient from rain forest to savanna, encompassing the crest and slopes of Mt. Lewis in North Queensland. Sampling was conducted using ground and baited arboreal pitfall traps, and yielded a total of 95 ant species. Mean trap species richness was identical in rain forest and rain-forest regrowth, somewhat higher in tall open forest, and twice as high again in savanna woodland. The great majority (78%) of the 58 species from savanna woodland were recorded only in this habitat type. MDS ordination of sites based on ant species composition showed a continuum from rain forest through rain-forest regrowth to tall open forest, and then a discontinuity between these habitat types and savanna woodland. These findings indicate that the contrast between rain forest and savanna ant communities in tropical Australia is an extreme manifestation of a broader forest-savanna disjunction.

The canopy disturbance regime and the influence of gap methods on the interpretation of forest structure and dynamics were evaluated in a tropical semi-deciduous forest in south-eastern Brazil. We encountered a gap density of 11.2 gaps ha−1 and an average size which varied from 121 to 333 m2 depending on the gap delimitation method considered (minimum gap size was 10 m2). Although average size was slightly higher, the median value obtained (78 m2) was comparable to other tropical forest sites and the gap size-class distribution found supported the pattern described for such forest sites. Among 297 gap makers, snapping and uprooting were the most common modes of disturbance. The number and basal area of gap makers were good predictors of gap size. Almost 25% of all gaps suffered from repeated disturbance events that brought about larger gap sizes. Such processes, along with delimitation methods, strongly influenced the estimation of turnover rate and therefore the interpretation of forest dynamics. These results demonstrated the importance of further studies on repeated disturbances, which is often neglected in forest studies.

Santalum austrocaledonicum Vieill. (Santalaceae) is a small tree endemic to New Caledonia and Vanuatu, well-known for the highly priced aromatic oil of its heartwood (Nasi & Ehrhart 1996). In New Caledonia, sandalwood grows on Loyalty Islands, the Isle of Pines and Grande-Terre (Bottin et al. 2006). The tree produces single-seeded fleshy drupes, which turn dark-red at maturity. Sandalwood seeds are dormant because of their hard coat and germinate only on physical scarification, or after removing the coat (Chauvin & Ehrhart 1998). In natural habitats, such seeds need further processing to relieve dormancy and promote germination, within a period where there is a good chance of successful seedling establishment (Murdoch & Ellis 2000).