Fast-growing plant species are plentiful at the early stages of succession and possess roots with greater capacity for soil exploration than slow-growing plant species of late stages. Thus, the dynamics of fine-root production, morphological traits and arbuscular mycorrhizal fungal (AMF) infection intensity were assessed monthly over 1 y in the grassland, scrub, secondary and mature forests of the Atlantic Forest ecosystem, amounting to 13 consecutive samplings. Fine roots were sampled in three 100 × 100-m plots at each study site. Each plot was subdivided in five 20 × 100-m subplots and 15 soil samples were randomly taken from a depth of 0–5 cm in soil within each plot. The average of the fine-root dry mass increased from 1.39 mg cm−3 soil in the grassland to 3.37 mg cm−3 in the secondary forest; fine-root tip diameter varied from 146 μm in the grassland to 303 μm in the mature forest; tissue density from 0.24 g cm−3 root in the grassland to 0.30 g cm−3 in the mature forest and fine-root length was 4.52 cm cm−3 soil in the grassland and 6.48 cm cm−3 soil in the secondary forest. On the other hand, fine-root specific length decreased from 43.9 m g−1 root to 18.3 m g−1 root in the mature forest; incidence of root hairs was 67% in the grassland and 30% in the mature forest; the length of root hairs was 215 μm in the grassland and 112 μm in the mature forest; and the intensity of AMF infection decreased from 66% in the grassland to 17% in the mature forest. In addition to AMF infection, the environmental variation also affected dry mass production and morphological traits of fine roots. During the cool season, fine-root dry mass, fine-root length, incidence and length of root hairs and intensity of AMF infection decreased compared with the warm season. We verified that the potential for soil exploration, that expresses the capacity for nutrient acquisition via fine roots and AMF infection intensity, decreased during the cool season and with the advance of the successional groups. These results indicate that fine-root traits and intensity of AMF infection are influenced by the intrinsic nutrient requirements of the plant species in each ecological group.

During the non-breeding season, shorebirds, a large and important group of wetland vertebrates, divide their time between foraging, resting and maintenance activities. We examined factors affecting time budgets, foraging techniques and rates, and spacing patterns of 14 to 92 individuals each of 10 shorebird species spending the non-breeding season in Cayo Guillermo, Cuba. We hypothesized that all species would spend the majority of their time foraging. Time spent foraging ranged from 20–85% of total time and was significantly negatively related to average body size. Apparent aggression (e.g. chasing or being chased) occurred in < 10% of individuals in all species and was not related to maximum counts of conspecifics. Aggression was most common in the black-necked stilt but did not vary in frequency as a function of activity. Vigilance varied in occurrence from 0–53% of individuals, but the frequency was not related to maximum counts. Intraspecific distances were generally greater between foraging than non-foraging birds. For most species interspecific distances were similar to intraspecific distances during foraging but greater than intraspecific differences during non-foraging, suggesting some overlap in foraging habitat and niche partitioning during non-foraging. Shorebirds that used primarily tactile techniques foraged closer together than primarily visual foragers. Low rates of aggression, as an index of potential competition, suggest that species-specific energy requirements rather than competitive interactions are the main determinants of foraging behaviour on these tropical non-breeding grounds.

Rigorous population studies on many small carnivores are lacking in India. Presence-absence models with habitat covariates were applied to estimate seasonal occupancy and abundance of nine small-carnivore species from camera-trap data in Mudumalai Tiger Reserve (2010 and 2011). We deployed 25 camera-trap stations in the deciduous forest, 21 in the semi-evergreen forest and 26 in the dry thorn forest. In total, 7380 trap-nights yielded 448 photographs of small carnivores: jungle cat (n = 72), leopard cat (n = 6), rusty-spotted cat (n = 11), small Indian civet (n = 89), common palm civet (n = 37), brown palm civet (n = 20), stripe-necked mongoose (n = 66), ruddy mongoose (n = 96) and Indian grey mongoose (n = 51). In the dry season, rusty-spotted cat was the rarest carnivore with an average abundance (λmean) of 0.24 ± 0.26, while ruddy mongoose was the most abundant (λmean = 0.90 ± 0.40). In the wet season, leopard cat was the rarest species (λmean = 0.048 ± 0.041) while grey mongoose was the most abundant (λmean = 0.68 ± 0.35). Abundance of jungle cat, common palm civet, ruddy mongoose and grey mongoose increased in the dry thorn forest whereas in the dry season abundance of small Indian civet decreased in this forest type. Abundance of leopard cat and small Indian civet was not influenced by habitat in the wet season. Deciduous forest was positively associated with abundance of rusty-spotted cat. Deciduous and semi-evergreen forests had a positive effect on abundance of stripe-necked mongoose while the latter was a positive predictor of abundance and occupancy for brown palm civet. Improved modelling approaches can account for the spatio-temporal variation in habitat use of small carnivores occupying specialized niches in heterogeneous tropical forests of southern India.

Understanding the dietary needs of syntopic species is essential for examining species coexistence and resource partitioning. We analysed stable isotopes of carbon (δ13C) and nitrogen (δ15N) to estimate the diet of two putative nectarivorous bats on Puerto Rico, the brown flower bat (Erophylla bombifrons) and the Greater Antillean long-tongued bat (Monophyllus redmani). Isotopic ratios of δ13C and δ15N were obtained from whole blood of both species of bat and tissues of available plant foods and insect prey over 15 wk at the same locality. We used a concentration-dependent Bayesian mixing model to determine probability distributions of feasible dietary contributions for major potential foods used by each species of bat. Additionally, separate dietary estimates were conducted for males and non-reproductive, pregnant and lactating females to determine differences due to reproductive condition. Insects were an important source of protein for M. redmani, whereas E. bombifrons obtained most of its protein from plants. In both species of bat, lactating females had lower assimilated nitrogen than males, suggesting more reliance on plants for protein. We observed no intraspecific differences in assimilated carbon among reproductive conditions. Flight and lactation are energetically expensive and may explain the increased consumption of high-energy foods, such as fruit or nectar, in lactating female bats. Comparison of isotopes between E. bombifrons and M. redmani illustrate the differential use of food resources by these insular syntopic species of bat.

Nocturnal activity is generally presumed, but rarely evaluated in studies of tropical small mammals. When evaluated, activity is frequently presented as a fixed pattern, but actually it is the influence of biotic and abiotic factors on individuals. We investigated effects of age, sex, minimum temperature, reproductive and climatic seasons on activity of Didelphis aurita (Didelphimorphia, Didelphidae) in an Atlantic Forest area in south-eastern Brazil from June 2009 to December 2010. We captured 37 individuals, 51 times (28 females and 23 males). Activity of D. aurita was mostly nocturnal, but some individuals were active during the day (12%, N = 6). Nocturnal activity was bimodal, more prevalent in adults than juveniles, and different from most neotropical marsupials. Contrary to expectations, individuals of D. aurita were more active at colder temperatures, which indicates that low temperatures do not limit foraging behaviour.

Arbuscular mycorrhizal fungi (AMF) are an important biotic factor that influences tropical ecological succession and differently affect the woody species belonging to different successional stages. However, little is known about the influence of AMF on growth and reproduction of herbaceous and shrubby species of early phases of tropical succession. Thus, we assessed the effect of AMF on the development of 27 heliophilous herbaceous and shrubby tropical species. Plants were grown in greenhouse, in low- and high-fertility soils, with or without AMF, for 100 d. Most species grown with AMF exhibited high root infection intensity (≈80%), irrespective of soil fertility. In the low-fertility soil, non-mycorrhizal plants exhibited about 88% less shoot dry mass (SDM) than mycorrhizal plants, and AMF were crucial for the survival of most species. Non-mycorrhizal plants also had lower relative growth rate (RGR), total leaf area (TLA), leaf area expansion (LAE) and total root length (TRL). Six species flowered in the low-fertility soil, and flowering increased with AMF in one plant species and four species only flowered when mycorrhizal. In the high-fertility soil, non-mycorrhizal plants exhibited about 13% less SDM than mycorrhizal plants and also exhibited lower TLA, LAE, and nutrient concentrations in shoots. On the other hand, no major changes were observed for RGR, TRL and root dry mass for most of the species. Sixteen plant species flowered in the high-fertility soil, but most had earlier (11) and more abundant (10) flowering when mycorrhizal. Thus, AMF have different influences on the survival, growth and flowering of herbaceous and shrubby tropical species, depending on soil fertility: in low-fertility soil, AMF especially affect the survival, growth and flowering, whereas in high-fertility soil, AMF mainly influence the shoot nutrient concentrations and flowering.

Bats are important but understudied pollinators in the Palaeotropics, and much about their interactions with night-blooming, bat-pollinated plant species is still unknown. We compared visitation times to flowering and fruiting plant resources by nectarivorous bat species (obligate pollinators) and frugi-nectarivorous bat species (facultative pollinators) throughout the night to examine the temporal variability that occurs within Pteropodidae foraging. Timing of pollination is an important determinant of plant reproductive success and more temporally restrictive than fruit dispersal. We netted 179 nectarivorous bats and 209 frugi-nectarivorous bats across 367 total mist-net h at five plant species providing floral resources and six plant species providing fruit resources. We found that all three nectarivorous bat species in southern Thailand forage significantly earlier in the evening (20h30 versus 22h00), and over a significantly shorter time interval (1.73 h versus 3.33 h), than do the five most commonly netted frugi-nectarivorous species. These results indicate that the two feeding guilds may be imposing different selective pressures on bat-pollinated plant species and may comprise different functional groups. We propose that the observed differences in bat foraging times are due to temporal constraints imposed by the rewards of the plant species that they visit.

Calcium is an important nutrient for birds, especially for eggshell production and the mineralization of the skeleton of developing young. In temperate regions insects and seeds that form the bulk of the diet of breeding passerines do not contain sufficient calcium to meet the needs of breeding females and young; these birds obtain their calcium by eating snails, woodlice and millipedes. Little is known about the way tropical frugivorous passerines meet their calcium needs. The calcium contents of fruits of 34 species eaten by birds during the breeding season in mature floodplain forest in south-eastern Peru were determined. The suitability of these fruits as calcium sources for hypothetical 10-g and 25-g birds and for 26 species of frugivore that breed at the study site was evaluated based on bird body weight and on the rictal width of the bill, which influences feeding. Fruits of five species in the study area appear to be suitable sources of calcium for birds ≤25 g, although those of Ficus killipii (Moraceae) are likely optimal. The latter contain a lot of calcium (2.48% dry weight of pulp or c. 4.15 mg per pulp per fruit) and are small enough (mean diam. = 9 mm) for most birds to swallow whole, and trees produce large crops. Snails, woodlice and millipedes are common in the area and also contain sufficient calcium to meet birds’ needs. In addition, birds could likely meet their calcium needs through geophagy at natural mineral licks.

Little is known about the role of crabs as seed dispersers and predators. Recently, there has been interest in understanding their influence on plant recruitment in coastal forests. Secondary seed removal by crabs in a swamp-specialist tree, Myristica fatua, was investigated in the rare and patchy freshwater Myristica swamps in the Western Ghats in India. Tethered-line experiments were used to determine the role of crabs as secondary seed-removal agents in two study sites. Crabs transported a large percentage (63.3%) of seeds (n = 60) placed on the forest floor compared with rodents (25%) and other unknown agents (13.3%). Simultaneous choice experiments suggested that the nutrient-rich arils covering seeds were consumed, but there was no evidence for seed predation by crabs. A small percentage (13.3%) of monitored seeds (n = 60) germinated from within crab burrows. The spatial scale of secondary removal by crabs was restricted to < 10 m. In these fragmented swamp forests, secondary removal by crabs retains seeds largely within the swamps, where conditions for their establishment and survival are optimal. Thus, secondary seed removal by crabs could provide temporal and spatial refugia from seed predators such as rodents in Myristica fatua.

Successional state of forest and availability of pioneer plants are recognized factors affecting densities of leaf-cutting ants. However little is known about how abiotic factors can shape nest distributions. We investigated the effect of topography, soil, forest successional state and inundation risk on nest density and size of Atta cephalotes colonies along streams in a tropical wet forest in Costa Rica. In each forest type, we surveyed 12 sites, each site comprising five transects (10 × 100 m) varying in topography and proximity to streambeds. We found no difference regarding nest size or density between forest types or soil consociation. Nest density varied with topographic environment, with significantly higher nest density on slope tops (farther from streambeds) and without colonies in valley bottoms (closer to streambeds). Nests found in areas affected by the last great inundation before our study were scarcer and smaller than nests in non-flooded areas. We showed that inundation events favour an accumulation of Atta colonies towards higher sites, where they are also allowed to become larger and may survive longer. Inundation risk may be a strong force shaping the distribution of leaf-cutting ant nests in tropical floodplain forests, even concealing the relevance of successional state of forest.

Uncertainty about the H+ buffering capacity in tropical rain forest limits our ability to predict the future effect of anthropogenic deposition on the streamwater chemistry. Export of major ions to the stream and the ion-fluxes via rainfall, throughfall, litter-leachate and soil-water pathways were observed to examine the source of streamwater nutrients in a small catchment in Sabah, Malaysia. The streamwater and the ion-fluxes were measured for 3.75 and 2 y, respectively, by collecting water twice a month and setting ion-exchange-resin columns. Streamwater pH ranged from 6.5 to 7.6 and was not sensitive to water discharge controlling base cations. The NO3−-N, Ca2+ and Mg2+ fluxes were low in atmospheric depositions (0.6, 0.5 and 0.3 kg ha−1 y−1, respectively) and markedly increased in the litter layer. The NO3−-N flux decreased drastically from subsoil (70 kg ha−1 y−1) to the stream (1.4 kg ha−1 y−1) whereas the Ca2+ and Mg2+ fluxes were not different between subsoil (38 and 18 kg ha−1 y−1) and stream (30 and 15 kg ha−1 y−1). Neutral pH in tropical streams was mainly due to the base cation leaching with deep chemical weathering in deeper strata, and a rapid decrease in NO3− leaching from the subsoil to the stream.

The process by which solitary animals evolve to live in groups is a central question in biology. Conspecifics that compete for patchy resources may evolve incipient social behaviours such as group formation and conspecific tolerance when persistent aggressive interactions reduce resource access. In this investigation, a facultative group living species of whip spider was studied to understand the microhabitat resources that support group formation. Although most species of whip spider are solitary and oftentimes cannibalistic, Heterophrynus batesii sometimes aggregate in small groups at the bases of tree trunks. Twenty-five groups of whip spiders and associated tree buttress microhabitats were surveyed at Tiputini Biodiversity Station bordering Yasuní National Park in Eastern Amazonian Ecuador. Tree buttress complexity, surface area and other microhabitat variables were recorded. Heterophrynus batesii aggregated in groups of 2–8 animals and used large, buttressing, complex trees with more leaf litter relative to those available in the environment. This study showed that large groups of whip spiders require more complex microhabitats than smaller groups that were associated with more variable microhabitat parameters. These microhabitats act as patches of limited resources important for the species, and may have led to the evolution of tolerance and facultative group living.

The plant vigour hypothesis proposes that herbivores should favour feeding on more vigorously growing plants or plant modules. Similarly, we would expect herbivores to favour plants that regrow vigorously after herbivory. Larger animals, like elephants, may also select plant species relative to their availability and prefer species with larger growth forms in order to meet their intake requirements. The food preferences of the Bornean elephant (Elephas maximus borneensis) in the Lower Kinabatangan Wildlife Sanctuary, Sabah, Malaysia, were investigated along 12 transects in areas where elephants were recently sighted feeding. One hundred and eighty-two plants were eaten and 185 plants were measured for species availability along transects. Species vigour was determined by the monthly regrowth in new shoot length after elephant feeding and the number of new shoots produced on each plant. Measurements were carried out on each plant for 9 mo or until the new shoot was eaten. Plant sizes were determined from their basal diameter. The Bornean elephant did not prefer more vigorous species or species with larger growth forms. New shoots did not grow longer on preferred than avoided species. Additionally, unlike other elephants that live in a forest environment, the Bornean elephant preferred species from the Poaceae (specifically Phragmites karka and Dinochloa scabrida) over other plant types including gingers, palms, lianas and woody trees.

Amphibian populations have been declining worldwide, with multiple potential causes. At La Selva field station in north-eastern Costa Rica, previous work has shown that populations of many amphibians have decreased significantly since the 1970s, especially in primary forest. Starting in 1998, we investigated one of the most common frog species at La Selva, the poison-dart frog Oophaga pumilio (= Dendrobates pumilio). In a survey of 50 plots of 100 m2 in 1998, adult frogs were 4.6 times more abundant in secondary forest than in primary forest. Tadpoles were found only in secondary-forest plots. Almost all (89%) of the tadpoles were found in leaf axils of Dieffenbachia spp., which were much more abundant in secondary-forest than in primary-forest plots. The greater abundance of Dieffenbachia spp. in secondary forest was confirmed in a broad survey of ~11 km of trails within La Selva in 2002. When the same trails were resampled in 2012, Dieffenbachia spp. had been extirpated from 72% of the 50-m segments where plants were present in 2002; abundance was greatly reduced in the few trail segments where any Dieffenbachia spp. remained in 2012. The loss of Dieffenbachia spp., especially in secondary forest, removed the species most often used by O. pumilio for tadpole rearing. Based on counts of calling frogs in 2010, there was no difference in O. pumilio abundance in primary versus secondary forest, in striking contrast to multiple earlier surveys that found much greater frog abundance in secondary forest. We propose that the reason for the rapid decline in Dieffenbachia spp. is herbivory by the collared peccary (Pecari tajacu), which has increased in abundance at La Selva in recent years. A likely consequence is continued reduction in O. pumilio populations.

Land-use change in tropical forests can affect the micro-environment for decomposition under modified canopies. In turn, decomposition may have consequences for soil fertility and ecosystem sustainability. The effects of the conversion from primary forest to pastures on leaf-litter decomposition and its recovery in secondary forests 20 y after pasture abandonment were evaluated using litterbags and a general mixed model approach. Litterbags containing leaf-litter of two contrasting qualities were placed in those three ecosystems and the mass remaining after 90 d was quantified. The mass remaining was 50% lower in high- than in low-quality leaves. The effects of the decomposition environment depended on the substrate quality. Although differences among ecosystems were not significant for low-quality leaves, high-quality leaves decomposed more slowly in pastures than in forests (mean dry mass remaining was 38% in pastures, 14% in secondary and 12% in primary forest). The decomposition of common substrates did not differ among forests. Results show that the conversion of primary forest to pasture may produce conditions for slower decomposition; however, these conditions appear be restored to a great extent in 20-y-old secondary forests.

Odontomachus chelifer ants collect fallen arillate seeds of Cabralea canjerana (Meliaceae), a bird-dispersed tree of the Atlantic rain forest. In the nest the larvae are fed with the lipid-rich aril, and the viable seed is discarded. Benefits from secondary seed dispersal by ants are well documented for tropical plants, but benefits to ants from consuming vertebrate-dispersed diaspores are uncertain. Twelve captive colonies of O. chelifer were used to investigate the effect of aril consumption on larval development. Treatment colonies were supplemented with 1 g of C. canjerana arils, whereas control colonies were supplemented with 1 g of synthetic diet. Egg and larval production did not differ between experimental colonies after 5 mo. Aril-fed larvae, however, grew 3.5 times larger than those in control colonies. Essential fatty acids in the arils possibly account for improved larval development. Consumption of lipid-rich arils may be critical under scarcity of arthropod prey. Improved larval development through aril consumption confirms that this ant-seed interaction is facultatively mutualistic. This result is meaningful given the predominantly carnivorous diet of O. chelifer, and the generalized nature of ant-seed/fruit interactions in tropical forests. Whether or not benefits to larvae translate into significant gains for ant colonies is uncertain.

In dioecious plant species different frugivore activity between genders may influence the abundance and richness of the seedling banks underneath their canopies throughout seed removal and dispersal. In the tropical dry forest of Chamela, on the Pacific Coast of Mexico, the role of S. purpurea female trees as nucleation sites of regeneration was investigated. The standing density, species richness and dispersal syndrome of woody seedlings (i.e. trees and shrubs, 10–100 cm tall) recruited underneath and outside the canopy of 10 male and 10 female S. purpurea trees were recorded in a total of 160 1-m2 plots. Total density was greater in seedling communities associated with female trees (i.e. underneath and outside their canopies) as compared with male trees (231 vs. 153 seedlings, respectively); whereas overall species richness was greater underneath female canopies. Further, the density of zoochorous species were greater underneath the canopy of S. purpurea females (range = 0–5 plants m−2), than elsewhere (outside female canopies, range = 0–3 plants m−2; underneath and outside male canopies, range = 0–2 plants m−2), suggesting a directional dispersal bias towards them. Females of dioecious plant species may act as nucleation sites of initial seedling recruitment in tropical dry forests.

Lizards of the genus Anolis have been widely studied, however, little is known about the effects of environmental seasonality, food availability and geographic isolation on body condition, growth rate and habitat use of lizards. The existence of an insular and a continental population of Anolis nebulosus (clouded anole), separated by only 0.47 km, represents an ideal opportunity to address this topic. We compared seasonal fluctuations in food availability (arthropod density) for anoles, as well as body condition, growth rate and habitat use in the two populations. Food availability throughout the year was sampled every 2 mo by trapping arthropods at each site. Lizards were also monitored and measured every 2 mo by surveying three quadrats in each site over 2 y giving a total of 30 visits for each quadrat. Results suggested that composition and density of food supply was similar for the two populations. Nevertheless, food supply responded to seasonality of rainfall, with an increase of 1.5 times during the rainy season. Despite similarity in food availability, insular anoles had body condition that was 5–10 times better, with growth rate twice as fast, and used similar perches. The role of predation, and inter- and intraspecific competition are discussed as possible drivers.