Book contents
- Frontmatter
- Contents
- Preface
- Acknowledgments
- 1 The Central Dogma
- 2 RNA Secondary Structure
- 3 Comparing DNA Sequences
- 4 Predicting Species: Statistical Models
- 5 Substitution Matrices for Amino Acids
- 6 Sequence Databases
- 7 Local Alignment and the BLAST Heuristic
- 8 Statistics of BLAST Database Searches
- 9 Multiple Sequence Alignment I
- 10 Multiple Sequence Alignment II
- 11 Phylogeny Reconstruction
- 12 Protein Motifs and PROSITE
- 13 Fragment Assembly
- 14 Coding Sequence Prediction with Dicodons
- 15 Satellite Identification
- 16 Restriction Mapping
- 17 Rearranging Genomes: Gates and Hurdles
- A Drawing RNA Cloverleaves
- B Space-Saving Strategies for Alignment
- C A Data Structure for Disjoint Sets
- D Suggestions for Further Reading
- Bibliography
- Index
D - Suggestions for Further Reading
Published online by Cambridge University Press: 05 June 2012
- Frontmatter
- Contents
- Preface
- Acknowledgments
- 1 The Central Dogma
- 2 RNA Secondary Structure
- 3 Comparing DNA Sequences
- 4 Predicting Species: Statistical Models
- 5 Substitution Matrices for Amino Acids
- 6 Sequence Databases
- 7 Local Alignment and the BLAST Heuristic
- 8 Statistics of BLAST Database Searches
- 9 Multiple Sequence Alignment I
- 10 Multiple Sequence Alignment II
- 11 Phylogeny Reconstruction
- 12 Protein Motifs and PROSITE
- 13 Fragment Assembly
- 14 Coding Sequence Prediction with Dicodons
- 15 Satellite Identification
- 16 Restriction Mapping
- 17 Rearranging Genomes: Gates and Hurdles
- A Drawing RNA Cloverleaves
- B Space-Saving Strategies for Alignment
- C A Data Structure for Disjoint Sets
- D Suggestions for Further Reading
- Bibliography
- Index
Summary
The following books are especially recommended for further reading. The citations in each category are arranged roughly from most to least accessible.
Algorithms and Programming in General Bentley (1999); Garey and Johnson (1979); Cormen et al. (1990)
Computational Molecular Biology Mount (2001); Setubal and Meidanis (1997); Salzberg, Searls, and Kasif (1998b); Lander andWaterman (1995); Pevzner (2000)
General Genetics and Molecular Biology Brown (1999); Nicholl (1994); Lewin (1999); Snustad and Simmons (1999); Russell (1992)
Perl Wall et al. (1997); Vromans (2000); Srinivasan (1997)
Public-Domain Databases and Software Gibas and Jambeck (2001); Baxevanis and Ouellette (2001)
Protein Structure Goodsell (1996); Brandon and Tooze (1999)
Statistical Modeling of Sequences Durbin et al. (1998); Baldi and Brunak (1998)
- Type
- Chapter
- Information
- Genomic PerlFrom Bioinformatics Basics to Working Code, pp. 318Publisher: Cambridge University PressPrint publication year: 2002