Current in vitro assays for RNA editing in kinetoplastids directly
examine the products generated by incubation of pre-mRNA substrate
with guide RNA (gRNA) and mitochondrial (mt) extract. RNA editing
substrates that are modeled on hammerhead ribozymes were designed
with catalytic cores that contained or lacked additional uridylates
(Us). They proved to be sensitive reporters of editing activity
when used for in vitro assays. A deletion editing substrate
that is based on A6 pre-mRNA had no ribozyme activity, but its
incubation with gRNA and mt extract resulted in its deletion
editing and production of a catalytically active ribozyme.
Hammerhead ribozymes are thus sensitive tools to assay in vitro
RNA editing.