Coastal marine environments are subject to a variety of anthropogenic pressures that can negatively impact habitats and the biodiversity they harbor. Conservation actions such as marine protected areas, marine reserves, and other effective area-based conservation measures, are pivotal tools for protecting coastal biodiversity. However, to be effective, conservation area networks must be planned through a systematic conservation planning (SCP) approach. Recently, such approaches have begun to orient their goals toward the conservation of different biodiversity facets and to integrate different types of data. In this review, we illustrate how genetic data and molecular techniques can bring useful knowledge for SCP approaches that are both more comprehensive (sampling the full range of biodiversity) and more adequate (ensuring the long-term persistence of biodiversity). With an emphasis on coastal organisms and habitats, we focus on phylogenetic analysis, the estimation of neutral and adaptive intraspecific genetic diversity at different spatial levels (alpha, beta, and gamma), the study of connectivity and dispersal, and the information obtainable from environmental DNA techniques. For each of these applications, we discuss the benefits of its integration into SCP for coastal systems, its strengths and weaknesses, and the aspects yet to be developed.

There have been calls for the expansion of protected areas (PAs) to tackle the ongoing biodiversity loss, yet it is unclear where future PAs might help to protect biodiversity in degraded landscapes under the conservation planning principles of complementarity, connectivity and cost-effectiveness. Our conservation goal is to increase the PA network coverage to up to 30% of the landscape of the Zhangjiang River Basin for target species in the karst area of southwest China, a global biodiversity hotspot. Zonation 4GUI was used to evaluate the adequacy of current PAs and to strategically expand PAs while maximizing the coverage of target species and considering ecological integrity and socioeconomic activities. The results show that significant habitat degradation has occurred across 77.9% of the basin. The current PAs cover 6.3% of the site and represent 8.7% of the total distribution of key species. With regards to the threshold of protection of 30% of the area, protecting an additional 27.2% of the site under an ecological integrity prioritization scenario and a scenario of the socioeconomic costs involved in iteration would cover 93.5% and 80.4% of the ranges of the key species, respectively. Our results can be used to inform the upcoming actions associated with karst area conservation-related policies.

The jaguar Panthera onca, a threatened species in Brazil, is losing suitable habitat as a result of agricultural expansion and other forms of land conversion, especially in the Cerrado biome. In the current context of habitat loss and fragmentation, a network of protected areas is paramount for the conservation of this species. We aimed to identify jaguar conservation units in the Cerrado, and propose a ranking of priority areas for the species in this region. We used the maximum entropy algorithm to model habitat suitability for the jaguar in the Cerrado, with nine uncorrelated environmental variables and 106 non-autocorrelated presence-only records. We prioritized regions, using Zonation, and ranked jaguar conservation units according to their area, proximity to strictly protected areas, jaguar presence, and potential for connectivity. Circa 30% of the Cerrado is suitable for the jaguar. The most important variables affecting jaguar distribution are mean rainfall and land cover, with a high probability of jaguar presence in forest and savannah. We selected 31 high-priority jaguar conservation units, covering c. 174,825 km2 (8.5%) of the Cerrado. We emphasize the need for new protected areas and the promotion of sustainable development, as only 0.4% of the Cerrado (8,345 km2) has high environmental suitability for jaguars and < 1% of the area covered by jaguar conservation units falls within protected areas. Most jaguar conservation units identified here are relevant for habitat connectivity in Brazil, given their proximity to other critical areas for jaguar conservation in the Caatinga and the Amazon.