Box H/ACA small nucleolar ribonucleoprotein particles (snoRNPs)
contain four essential proteins, Cbf5p, Gar1p, Nhp2p, and Nop10p,
each of which, with the exception of Gar1p, is required for
box H/ACA snoRNA accumulation. Database searches identified
a novel essential protein, which we termed Naf1p, with a region
of homology to the RNA-binding domain of Gar1p and other features
in common with hnRNP-like proteins. Naf1p is localized to the
nucleus and is not a stable component of the H/ACA snoRNPs,
but it is required for the accumulation of all box H/ACA snoRNAs.
This requirement is not at the level of snoRNA transcription
initiation or termination. Naf1p shows in vitro RNA-binding
activity and also binds directly to Cbf5p and Nhp2p. Naf1p was
shown to bind to the CTD in vivo in a two-hybrid assay, and
the phosphorylated CTD, but not the nonphosphorylated CTD, was
shown to precipitate tagged Naf1p from a cell lysate. We propose
that Naf1p is recruited to the CTD of RNA polymerase II and
binds to nascent box H/ACA snoRNAs promoting snoRNP assembly.