Lipoxygenases are widely distributed in the animal and plant kingdoms. These enzymes catalyse the hydroperoxidation of polyunsaturated fatty acids containing cis,cis-1,4-pentadiene moieties. Multiple isoenzymes, with different biochemical properties and tissue distribution, have been described for many plants. Lipoxygenases occur in vegetative tissues, but also accumulate in various seeds, and especially in leguminous seeds. Although several functions have been proposed for vegetative lipoxygenases, the roles of seed lipoxygenases remain enigmatic. In this review we discuss whether physiological functions assigned to vegetative lipoxygenases can be extended to seed isoforms.