Inhibition of translation by small molecule ligands has proven
to be a useful tool for understanding this complex cellular
mechanism, as well as providing drugs of significant medical
importance. Many small molecule ligands inhibit translation
by binding to RNA or RNA/protein components of the ribosomal
subunits and usurping their function. A class of peptidomimetics
[aminoglycoside–arginine conjugates (AAC)] has
recently been designed to inhibit HIV TAR/tat interaction and
in experiments aimed at assessing the inhibitory effects of
AACs on TAR-containing transcripts, we found that AACs are general
inhibitors of translation. Experiments reported herein aim at
characterizing these novel properties of AACs. We find that
AACs are inhibitors of eukaryotic and prokaryotic translation
and exert their effects by blocking peptide chain elongation.
Structure/activity relationship studies suggest that inhibition
of translation by AACs is directly related to the number of
arginine groups present on the aminoglycoside backbone and to
the nature of the core aminoglycoside. AACs are therefore
attractive tools for understanding and probing ribosome function.