A content analysis of 167 country reports submitted for the United Nations Food and Agriculture Organization's State of the World's Animal Genetic Resources for Food and Agriculture was conducted to determine the extent to which protected areas are recognized as means of conserving domestic animal diversity. For countries in which protected areas were reported to help conserve the diversity of domesticated animals, additional details were sought from a review of related literature. Protected areas were seldom discussed in country reports and were most often mentioned as means to protect biodiversity in general, wild relatives of domesticated animals or wild game species. The most frequently mentioned way in which protected areas conserve domestic animal diversity is through initiatives that utilize indigenous breeds of livestock in nature conservation programmes. By offering farmers financial incentives for these ecological services, protected areas help offset potential economic disadvantages of raising indigenous breeds that may be less productive in industrial environments. Additional incentives to raise indigenous breeds are supported by protected areas such as niche marketing of organic food and fibre, establishing “seed herd” programmes and tourism promotion. Many opportunities exist for protected area managers and authorities responsible for conserving animal genetic resources for food and agriculture to fulfil mutually compatible objectives.