We study shot noise processes with cluster arrivals, in which entities in each cluster may experience random delays (possibly correlated), and noises within each cluster may be correlated. We prove functional limit theorems for the process in the large-intensity asymptotic regime, where the arrival rate gets large while the shot shape function, cluster sizes, delays, and noises are unscaled. In the functional central limit theorem, the limit process is a continuous Gaussian process (assuming the arrival process satisfies a functional central limit theorem with a Brownian motion limit). We discuss the impact of the dependence among the random delays and among the noises within each cluster using several examples of dependent structures. We also study infinite-server queues with cluster/batch arrivals where customers in each batch may experience random delays before receiving service, with similar dependence structures.