Class-1 polypeptide chain release factors (RFs) play a key
role in translation termination. Eukaryotic (eRF1) and archaeal
class-1 RFs possess a highly conserved Asn-Ile-Lys-Ser (NIKS)
tetrapeptide located at the N-terminal domain of human eRF1.
In the three-dimensional structure, NIKS forms a loop between
helices. The universal occurrence and exposed nature of this
motif provoke the appearance of hypotheses postulating an essential
role of this tetrapeptide in stop codon recognition and ribosome
binding. To approach this problem experimentally, site-directed
mutagenesis of the NIKS (positions 61–64) in human eRF1
and adjacent amino acids has been applied followed by determination
of release activity and ribosome-binding capacity of mutants.
Substitutions of Asn61 and Ile62 residues of the NIKS cause
a decrease in the ability of eRF1 mutants to promote termination
reaction in vitro, but to a different extent depending on the
stop codon specificity, position, and nature of the substituting
residues. This observation points to a possibility that Asn-Ile
dipeptide modulates the specific recognition of the stop codons
by eRF1. Some replacements at positions 60, 63, and 64 cause
a negligible (if any) effect in contrast to what has been deduced
from some current hypotheses predicting the structure of the
termination codon recognition site in eRF1. Reduction in ribosome
binding revealed for Ile62, Ser64, Arg65, and Arg68 mutants
argues in favor of the essential role played by the right part
of the NIKS loop in interaction with the ribosome, most probably
with ribosomal RNA.