Hybrid seed production often relies on managed pollinators whose use in isolation cages can pose challenges. Here, we evaluated the pollination ability of the novel managed pollinator Eristalinus aeneus (Diptera: Syrphidae) in hybrid celery and fennel seed crops. During trials performed in 2019–2020 in Cordoba, Spain, we compared seed production with hoverflies released at high and low densities (40–20 ind./m2), and without released pollinators. In celery, we included a treatment with Lucilia sericata (Diptera: Calliphoridae), a blowfly used for seed production (375 ind./m2). The production of celery seeds when E. aeneus were released at high density was significantly higher (+49%) than without released pollinators, for both sterile and fertile plant genotypes; no significant differences were found between the two hoverfly densities and the blowfly treatments. In fennel, seed yield of fertile plants with high density of hoverflies was higher than with low density (+149%), or without released pollinators (+168%); whereas for sterile plants no differences were found between treatments. In both crops and plant genotypes, the highest pollen adhesion to stigmas (number of pollen grains and proportion of flowers with pollen adhered in two stigmas) was obtained with hoverflies at high density. In celery, pollen adhesion was higher with high density of hoverflies than with blowflies for both plant genotypes, despite the considerably lower numbers of released hoverflies. Our results suggest that E. aeneus is a more efficient pollinator of celery than L. sericata, and that it has the potential to effectively pollinate other hybrid Apiaceae seed crops like fennel.