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helix–coil transitions

RNA (1)

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An approximation of loop free energy values of RNA H-pseudoknots
ALEXANDER P. GULTYAEV, F.H.D. VAN BATENBURG, CORNELIS W.A. PLEIJ
Journal:

RNA / Volume 5 / Issue 5 / May 1999

Published online by Cambridge University Press:

01 May 1999, pp. 609-617

Print publication:

May 1999
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A set of free energy values is suggested for RNA H-pseudoknot loops. The parameters are adjusted to be consistent with the theory of polymer thermodynamics and known data on pseudoknots. The values can be used for estimates of pseudoknot stabilities and computer predictions of RNA structures.