Altman and colleagues (this issue) call attention to
the inability of current standardized enzyme nomenclature
to distinguish between enzymatic activities that reside
in nonhomologous macromolecules. This issue is highlighted
by the fact that the pre-tRNA 5′-maturation activities
of bacteria and plant chloroplasts present the first instance
(of which I am aware) of two naturally occurring enzymes
that cannot be evolutionarily related, but which catalyze
an identical reaction. (In the classic example of convergent
evolution between the trypsin family and subtilisin, the
enzymes do not have an identical substrate specificity.)
Altman and colleagues propose that a single trivial name
be used only for members of a family of homologous macromolecules;
in other words, that different trivial names be given to
enzymes that catalyze the same precursor–product
conversion but do so with different catalytic mechanisms,
or which are not members of a single family of homologous
macromolecules.