In this paper, the influence of the cutting plane as well as the orientation of the cavities in cross-coupled W-band waveguide filters are investigated. When waveguide filters are manufactured with the commonly known CNC (computer numerical control) milling technique, at least one cutting plane is required. The position of this cutting plane has an impact on the composition of the cavities, the manufacturing accuracy, and on the maximal number of transmission zeros (TZs) introduced by a direct source to load (SL) cross-coupling. Similar filter set-ups therefore may show different performances depending on the position of this cutting plane. To examine all these effects, three similar fourth-order W-band filter set-ups are realized with distinct cutting planes and different oriented cavities. The filters are compared in terms of the sensitivity to manufacturing tolerances, the maximal number of TZs introduced by a direct SL cross-coupling as well as their spurious mode performance.