Several de novo designed ionic peptides that are able
to undergo conformational change under the influence
of temperature and pH were studied. These peptides have
two distinct surfaces with regular repeats of alternating
hydrophilic and hydrophobic side chains. This permits extensive
ionic and hydrophobic interactions resulting in the formation
of stable β-sheet assemblies. The other defining characteristic
of this type of peptide is a cluster of negatively charged
aspartic or glutamic acid residues located toward the N-terminus
and positively charged arginine or lysine residues located
toward the C-terminus. This arrangement of charge balances
the α-helical dipole moment (C → N), resulting
in a strong tendency to form stable α-helices as well.
Therefore, these peptides can form both stable α-helices
and β-sheets. They are also able to undergo abrupt
structural transformations between these structures induced
by temperature and pH changes. The amino acid sequence
of these peptides permits both stable β-sheet and α-helix
formation, resulting in a balance between these two forms
as governed by the environment. Some segments in proteins
may also undergo conformational changes in response to
environmental changes. Analyzing the plasticity and dynamics
of this type of peptide may provide insight into amyloid
formation. Since these peptides have dynamic secondary
structure, they will serve to refine our general understanding
of protein structure.