Escherichia coli release factor 3 (RF3)
is a G protein involved in the termination of protein synthesis
that stimulates the activity of the stop signal decoding
release factors RF1 and RF2. Paradoxically for a G protein,
both GDP and GTP have been reported to modulate negatively
the activity of nucleotide-free RF3 in vitro. Using a direct
ribosome binding assay, we found that RF3·GDPCP,
a GTP analogue form of RF3, has a 10-fold higher affinity
for ribosomes than the GDP form of the protein, and that
RF3·GDPCP binds to the ribosome efficiently in the
absence of the decoding release factors. These effects
show that RF3 binds to the ribosome as a classical translational
G protein, and suggest that the paradoxical inhibitory
effect of GTP on RF3 activity in vitro is most likely due
to untimely and unproductive ribosome-mediated GTP hydrolysis.
Nucleotide-free RF3 has an intermediate activity and its
binding to the ribosome exhibits positive cooperativity
with RF2. This cooperativity is absent, however, in the
presence of GDPCP. The observed activities of nucleotide-free
RF3 suggest that it mimics a transition state of RF3 in
which the protein interacts with the decoding release factor
while it enhances the efficiency of the termination reaction.