Slu7 and Prp18 act in concert during the second step of yeast
pre-mRNA splicing. Here we show that the 382-amino-acid Slu7
protein contains two functionally important domains: a zinc
knuckle (122CRNCGEAGHKEKDC135) and a
Prp18-interaction domain (215EIELMKLELY224).
Alanine cluster mutations of 215EIE217 and
221LELY224 abrogated Slu7 binding to Prp18
in a two-hybrid assay and in vitro, and elicited temperature-sensitive
growth phenotypes in vivo. Yet, the mutations had no impact on Slu7
function in pre-mRNA splicing in vitro. Single alanine mutations of
zinc knuckle residues Cys122, His130, and Cys135 had no effect on cell
growth, but caused Slu7 function during pre-mRNA splicing in vitro to
become dependent on Prp18. Specifically, zinc knuckle mutants required
Prp18 in order to bind to the spliceosome. Compound mutations in both
Slu7 domains (e.g., C122A-EIE, H130A-EIE, and C135A-EIE) were lethal in
vivo and abolished splicing in vitro, suggesting that the physical
interaction between Slu7 and Prp18 is important for cooperation
in splicing. Depletion/reconstitution studies coupled with
immunoprecipitations suggest that second step factors are recruited
to the spliceosome in the following order: Slu7 → Prp18
→ Prp22. All three proteins are released from the spliceosome
after step 2 concomitant with release of mature mRNA.