Pteropus vampyrus natunae, the Bornean subspecies of the large flying fox, has important roles in pollination but unsustainable hunting has been reported in Malaysian states. We provide the first description of hunting techniques and intensity in Indonesian Borneo. In forests around Palangka Raya this species is captured in canopy-level nets to support trade in the provincial capital. We estimate that in 2003 4,500 individuals were extracted from a single location in 30 days, which, together with trends reported in interviews with hunters and traders, suggests that hunting in this region is intensive and probably causing severe population declines. Further surveys are needed throughout Kalimantan to determine if this trend is occurring around other cities and whether intervention is needed to safeguard viable populations.