Molecular assays are often implemented by weed scientists for detection of
herbicide-resistant individuals; however, the utility of these assays can be
limited if multiple mechanisms of evolved resistance exist. Waterhemp
resistant to protoporphyrinogen oxidase (PPO)– inhibiting herbicides is
conferred by a target-site mutation in PPX2L (a gene coding
for PPO), resulting in the loss of a glycine at position 210 (ΔG210). This
ΔG210 mutation of PPX2L is the only known mechanism
responsible for PPO-inhibitor resistance (PPO-R) in waterhemp from five
states (Illinois, Indiana, Iowa, Kansas, and Missouri); however, a limited
number of populations have been tested, especially in Illinois. To verify
the ubiquity of the ΔG210 in PPO-R waterhemp populations in Illinois, a
previously published allele-specific PCR (asPCR) was used for the detection
of the ΔG210 mutation to associate this mutation with phenotypic resistance
in 94 Illinois waterhemp populations. The ΔG210 mutation was detected in all
populations displaying phenotypic resistance to lactofen (220 g ai
ha−1), indicating the deletion is likely the only mechanism of
resistance. With evidence that the ΔG210 mutation dominates PPO-R waterhemp
biotypes, molecular detection techniques have considerable utility.
Unfortunately, the previously published asPCR is time consuming, very
sensitive to PCR conditions, and requires additional steps to eliminate the
possibility of false negatives. To overcome these limitations, a streamlined
molecular method using the TaqMan® technique was developed, utilizing
allele-specific, fluorescent probes for high-throughput, robust
discrimination of each allele (resistant and susceptible) at the 210th amino
acid position of PPX2L.