Although indigenous farmers and other traditional peoples have disturbed Amazonian forests for centuries, few studies investigate the effects of these disturbances on biodiversity. This short-term study investigates how bird assemblages are affected by agricultural practices adopted by the residents of a national park in the Brazilian Amazon. Twelve sites in secondary forest (four sites in three age categories) and 12 sites in primary forest were selected for bird sampling. Audio-visual censuses of birds were conducted in small plots (1 ha) of young secondary growth (4–5 y), middle-aged (7–15 y), and old (20–35 y) secondary forests. Each site in secondary forest had a corresponding control site in adjacent primary forest. Young secondary growth had fewer species than old secondary and primary forests. Bird species richness was similar in middle-aged, old secondary and primary forests. Bird communities of young secondary habitat were dominated by species normally found in open habitats, such as agricultural fields and igapó flooded forests. The bird species composition of young secondary growth was more similar to that of middle-aged forest, which in turn was more similar to that of old secondary forests. Bird species composition differed between young secondary growth and old secondary forests and primary forests and between middle-aged secondary and primary forests. Nectarivore/insectivores and frugivore/insectivores of monospecific flocks are significantly associated with secondary forests, especially in initial stages of forest regeneration. In contrast, specialized insectivorous birds that join mixed-flocks show a significant association with primary forest.