The eukaryotic small nucleolar RNAs (snoRNAs) are
involved in processing of pre-rRNA and modification of
rRNA nucleotides. Some snoRNAs are derived from mono- or
polycistronic transcription units, whereas others are encoded
in introns of protein genes. The present study addresses
the role of the RNA lariat-debranching enzyme (Dbr1p) in
the synthesis and function of intronic snoRNAs in the yeast
Saccharomyces cerevisiae. Intronic snoRNA production
was determined to depend on Dbr1p. Accumulation of mature
intronic snoRNAs is reduced in a dbr1 mutant;
instead, intronic snoRNAs are “trapped” within
host intron lariats. Interestingly, the extent of intronic
snoRNA accumulation in the form of lariats in dbr1
cells varied among different intronic snoRNAs. Intronic
snoRNAs encoded within shorter introns, such as U24 and
snR38, accumulate more unprocessed lariat precursors than
those encoded within longer introns, e.g., U18 and snR39.
This correlation was corroborated by experiments conducted
with model intron:U24 snoRNA constructs. These results
support a splicing-dependent exonucleolytic pathway for
the biosynthesis of intronic snoRNAs. Curiously, U24 in
a lariat may be functional in directing methylation of
ribosomal RNA.