Over the last few decades botanic gardens worldwide have been encouraged to adopt complementary measures for the conservation of plant species from their own regions, combining in situ conservation efforts with ex situ methods, both in cultivation and in storage. This integrated approach is particularly important for botanic gardens in the tropics, which face the challenge of conserving a highly diverse and often threatened flora. We gathered information on the occurrence of threatened species in the natural vegetation reserves of 21 Brazilian botanic gardens. The data were collected from herbarium records in the database of the National Centre for Flora Conservation, and from the available plant inventories of these reserves. The results indicate that 148 species from the List of Threatened Species of Brazilian Flora are recorded as having been collected in the reserves. Of these, 51 species were maintained in the living collections of 18 botanic gardens and 83 species were recorded in federally protected areas. The occurrence of threatened species in the reserves of botanic gardens highlights the scientific value of these areas, as well as their biological, social and cultural importance for conservation. The results may be used to inform the planning of integrated conservation strategies for threatened species.