We define the Atiyah class for global matrix factorisations and use it to give a formula for the categorical Chern character and the boundary-bulk map for matrix factorisations, generalising the formula in the local case obtained in [12]. Our approach is based on developing the Lie algebra analogies observed by Kapranov [7] and Markarian [9].

We construct a general semiregularity map for algebraic cycles as asked for by S. Bloch in 1972. The existence of such a semiregularity map has well known consequences for the structure of the Hilbert scheme and for the variational Hodge conjecture. Aside from generalizing and extending considerably previously known results in this direction, we give new applications to deformations of modules that encompass, for example, results of Artamkin and Mukai. The formation of the semiregularity map here involves powers of the cotangent complex, Atiyah classes, and trace maps, and is defined not only for subspaces of manifolds but for perfect complexes on arbitrary complex spaces. It generalizes in particular Illusie's treatment of the Chern character to the analytic context and specializes to Bloch's earlier description of the semiregularity map for locally complete intersections as well as to the infinitesimal Abel–Jacobi map for submanifolds.