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Effect of polygenic risk score, family load of schizophrenia and exposome risk score, and their interactions, on the long-term outcome of first-episode psychosis

Published online by Cambridge University Press:  06 March 2023

M. J. Cuesta*
Affiliation:
Department of Psychiatry, Hospital Universitario de Navarra, Pamplona, Spain Navarra Institute for Health Research (IdiSNA), Pamplona, Spain
S. Papiol
Affiliation:
Centro de Investigación Biomédica en Red de Salud Mental, Instituto de Salud Carlos III, Madrid, Spain Institute of Psychiatric Phenomics and Genomics (IPPG), University Hospital, LMU Munich, Munich, 80336, Germany Max Planck Institute of Psychiatry, Munich, Germany
B. Ibañez
Affiliation:
Navarra Institute for Health Research (IdiSNA), Pamplona, Spain Navarrabiomed – Hospital Universitario de Navarra – UPNA, Pamplona, Spain Red de Investigación en Atención Primaria, Servicios Sanitarios y Cronicidad (RICAPPS), Barcelona, Spain
E. García de Jalón
Affiliation:
Navarra Institute for Health Research (IdiSNA), Pamplona, Spain Mental Health Department, Servicio Navarro de Salud, Pamplona, Spain
A. M. Sánchez-Torres
Affiliation:
Department of Psychiatry, Hospital Universitario de Navarra, Pamplona, Spain Navarra Institute for Health Research (IdiSNA), Pamplona, Spain
G. J. Gil-Berrozpe
Affiliation:
Department of Psychiatry, Hospital Universitario de Navarra, Pamplona, Spain Navarra Institute for Health Research (IdiSNA), Pamplona, Spain
L. Moreno-Izco
Affiliation:
Department of Psychiatry, Hospital Universitario de Navarra, Pamplona, Spain Navarra Institute for Health Research (IdiSNA), Pamplona, Spain
A. Zarzuela
Affiliation:
Navarra Institute for Health Research (IdiSNA), Pamplona, Spain Mental Health Department, Servicio Navarro de Salud, Pamplona, Spain
L. Fañanás
Affiliation:
Centro de Investigación Biomédica en Red de Salud Mental, Instituto de Salud Carlos III, Madrid, Spain Department of Evolutionary Biology, Ecology and Environmental Sciences, Faculty of Biology, University of Barcelona, Biomedicine Institute of the University of Barcelona (IBUB), Barcelona, Spain
V. Peralta
Affiliation:
Navarra Institute for Health Research (IdiSNA), Pamplona, Spain Mental Health Department, Servicio Navarro de Salud, Pamplona, Spain
SEGPEPs Group
Affiliation:
Red de Salud Mental de Álava, Vitoria-Gasteiz, Spain CSMIJ Ciutat Vella. Consorci Parc de Salut Mar, Barcelona, Spain
*
Author for correspondence: M. J. Cuesta, E-mail: [email protected]
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Abstract

Background

Consistent evidence supports the involvement of genetic and environmental factors, and their interactions, in the etiology of psychosis. First-episode psychosis (FEP) comprises a group of disorders that show great clinical and long-term outcome heterogeneity, and the extent to which genetic, familial and environmental factors account for predicting the long-term outcome in FEP patients remains scarcely known.

Methods

The SEGPEPs is an inception cohort study of 243 first-admission patients with FEP who were followed-up for a mean of 20.9 years. FEP patients were thoroughly evaluated by standardized instruments, with 164 patients providing DNA. Aggregate scores estimated in large populations for polygenic risk score (PRS-Sz), exposome risk score (ERS-Sz) and familial load score for schizophrenia (FLS-Sz) were ascertained. Long-term functioning was assessed by means of the Social and Occupational Functioning Assessment Scale (SOFAS). The relative excess risk due to interaction (RERI) was used as a standard method to estimate the effect of interaction of risk factors.

Results

Our results showed that a high FLS-Sz gave greater explanatory capacity for long-term outcome, followed by the ERS-Sz and then the PRS-Sz. The PRS-Sz did not discriminate significantly between recovered and non-recovered FEP patients in the long term. No significant interaction between the PRS-Sz, ERS-Sz or FLS-Sz regarding the long-term functioning of FEP patients was found.

Conclusions

Our results support an additive model of familial antecedents of schizophrenia, environmental risk factors and polygenic risk factors as contributors to a poor long-term functional outcome for FEP patients.

Type
Original Article
Copyright
Copyright © The Author(s), 2023. Published by Cambridge University Press

Introduction

Clinical outcomes in psychotic disorders appear to have improved over recent years after initiating early intervention services for at-risk states of psychosis and first-episode psychosis (FEP) (Fusar-Poli, McGorry, & Kane, Reference Fusar-Poli, McGorry and Kane2017). However, FEP patients show marked heterogeneity of outcome and systematic evidence on the long-term outcomes of FEP patients is very limited (Heilbronner, Samara, Leucht, Falkai, & Schulze, Reference Heilbronner, Samara, Leucht, Falkai and Schulze2016; Johnstone, Frith, Lang, & Owens, Reference Johnstone, Frith, Lang and Owens1995). Genetic and environmental factors, and their interactions, seem to be essential not only in the development of schizophrenia and FEP but also in their long-term outcome (van Os, Kenis, & Rutten, Reference van Os, Kenis and Rutten2010).

It is well established that psychotic disorders share substantial polygenic components by means of rare and common genetic risk factors for disease that converge on common neurobiological mechanisms (Iyegbe & O'Reilly, Reference Iyegbe and O'Reilly2022). Consistent advances in genomics allow for calculations of individual polygenic risk scores for schizophrenia (PRS-Sz) on the basis of the risk alleles identified in the most recent genome-wide association study (GWAS) of the Psychiatric Genomics Consortium (Trubetskoy et al., Reference Trubetskoy, Pardinas, Qi, Panagiotaropoulou, Awasthi and Bigdeli2022). PRSs provide a cumulative estimation of genome-wide effects of common variants, and consistent evidence has demonstrated their capacity to differentiate between cases and controls (Calafato et al., Reference Calafato, Thygesen, Ranlund, Zartaloudi, Cahn, Crespo-Facorro and Bramon2018; Vassos et al., Reference Vassos, Di Forti, Coleman, Iyegbe, Prata, Euesden and Breen2017). However, the amount of variance explained by the PRS-Sz for differentiation between schizophrenia cases and controls (7.3%) does not allow for its implementation in clinical practice and its discriminative ability between psychosis subtypes is still very limited (Rodriguez et al., Reference Rodriguez, Alameda, Quattrone, Tripoli, Gayer-Anderson, Spinazzola and Vassos2022).

One of the main challenges of personalized psychiatry in FEP is the search for improving the prognostic accuracy of illness course. Research on environmental factors has been scarcely addressed despite substantial evidence supporting environmental factors and exposures in the etiology of psychosis (Guloksuz et al., Reference Guloksuz, Pries, Delespaul, Kenis, Luykx, Lin and van Os2019; Radua et al., Reference Radua, Ramella-Cravaro, Ioannidis, Reichenberg, Phiphopthatsanee, Amir and Fusar-Poli2018; Stilo & Murray, Reference Stilo and Murray2019). In this regard, the combination of empirically-validated genome screening data with environmental risk factors having a high level of evidence for association with psychotic disorders may help in predicting the illness course at an individual level.

A recent population-based study found that the PRS-Sz, family psychiatric history and socioeconomic status were significantly associated with poor long-term outcome in schizophrenia patients (Agerbo et al., Reference Agerbo, Sullivan, Vilhjalmsson, Pedersen, Mors, Borglum and Mortensen2015). Despite their interdependencies, only modest fractions of variance in liability (7%) by the other predictors were explained (Agerbo et al., Reference Agerbo, Sullivan, Vilhjalmsson, Pedersen, Mors, Borglum and Mortensen2015). Taken together, the development and course of psychosis seem to be related to a combination of environmental and genetic effects because the latter by itself cannot explain the etiology of the illness (Stepniak et al., Reference Stepniak, Papiol, Hammer, Ramin, Everts, Hennig and Ehrenreich2014; van Os et al., Reference van Os, Kenis and Rutten2010). However, the extent to which the interplay between genetic, familial and environmental factors allows for predicting the long-term outcome in FEP patients is still unknown.

Epidemiological methods for ascertaining the strength of the direct effects of two risk factors on their own and regarding their interaction have been applied to gene–environment issues in psychosis (Kendler & Gardner, Reference Kendler and Gardner2010). These studies aimed at disentangling whether two risk factors have additive or multiplicative effects on a disease and whether these effects are more than their individual contribution (Mas et al., Reference Mas, Boloc, Rodriguez, Mezquida, Amoretti, Cuesta and Group2020; Pries et al., Reference Pries, Dal Ferro, van Os, Delespaul, Kenis, Lin and Guloksuz2020). In most situations in psychiatry, the use of additive models has been recommended (Kendler & Gardner, Reference Kendler and Gardner2010). The standard method used to estimate the effect of interaction of two risk factors in case–control studies is the relative excess risk due to interaction (RERI). The RERI provides a useful metric of departure from the additivity of effects on a relative risk scale (Hosmer & Lemeshow, Reference Hosmer and Lemeshow1992; Knol & VanderWeele, Reference Knol and VanderWeele2012).

Aims

Our primary aim was to determine whether an additive gene–environment (G × E) interaction based on polygenic and environmental risk scores influences the long-term outcome of FEP. Our secondary hypothesis was that familial antecedents would provide complementary information to the PRS-Sz in predicting the long-term outcomes of FEP.

Materials and methods

Sample

The SEGPEPs cohort included a large dataset of FEP patients who had their first admission for psychosis between January 1990 and December 2008 in a defined catchment area (Navarra, Spain) covering approximately 200 000 inhabitants in the public health system. A complete description of the SEGPEPs study has been published previously (Peralta et al., Reference Peralta, Moreno-Izco, Garcia de Jalon, Sanchez-Torres, Janda, Peralta and Group2021). The inclusion criteria for this longitudinal and naturalistic study were: a diagnosis of FEP fulfilling the DSM-III-R or DSM-IV criteria; age between 15 and 65 years; residing in the catchment area of the hospital; completing the inpatient treatment period and a six-month assessment after discharge; having close relatives available to provide broad background information; and providing written informed consent. Exclusion criteria were: previous antipsychotic treatment for more than 2 months; suspected or confirmed diagnosis of drug-induced psychosis; history of serious medical or neurological disease; and intellectual disability defined by an IQ of <70.

The SEGPEPs cohort comprised 510 FEP patients at baseline but the final sample after a mean follow-up of 20.9 years (s.d. = 5.21) was 243 subjects. There were no significant differences in baseline demographic and clinical characteristics between subjects who were followed up and those who were not, except for age, which was significantly lower in the sample that was followed up (p < 0.001) (Peralta et al., Reference Peralta, Garcia de Jalon, Moreno-Izco, Peralta, Janda, Sanchez-Torres and Group2022).

Assessment methodology and raters

FEP patients were assessed by senior researchers (VP or MJC) at the time of inception in the study. Patients were traced and those who consented to be re-evaluated at 10–22 years of follow-up were blindly evaluated by means of direct interviews with themselves and a close significant other or relative by two trained and expert psychiatrists (LMI and EGJ).

Baseline assessments

All patients were evaluated by means of the Comprehensive Assessment of Symptoms and History (Andreasen, Flaum, & Arndt, Reference Andreasen, Flaum and Arndt1992) (CASH), supplemented by specific assessment instruments to account for relevant variables not included in the CASH. All information collected was used to diagnose patients according to the DSM-5 criteria (APA, 2013).

Outcome measure

Psychosocial functioning was rated by means of the Social and Occupational Functioning Assessment Scale (SOFAS) (Goldman, Skodol, & Lave, Reference Goldman, Skodol and Lave1992) at the long-term follow-up assessment. A cut-off score of ⩾ 61 sustained over the last year was used to differentiate between functional recovered and non-recovered patients. A SOFAS score between 61 and 100 points reflects a gradient of recovery from a range of ‘some difficulty in social, occupational, or school functioning’ to ‘superior functioning in a wide range of activities’.

Polygenic risk score

Genome-wide genotyping was performed in a sample of 173 subjects using the Illumina Global Screening Array (730 059 genetic variants). Single nucleotide polymorphisms (SNPs) and individuals were excluded if their call rate was below 97%. One sample was removed due to such a call-rate threshold. Likewise, SNPs with minor allele frequency (MAF) < 0.05% were removed. No sex-mismatch was observed between genetic sex and clinical data sex. A first-degree relative was identified and then removed after computing their pairwise identity-by-descent values using PLINK 1.9 (Chang et al., Reference Chang, Chow, Tellier, Vattikuti, Purcell and Lee2015). To account for possible population stratification, we computed multi-dimensional scaling components using PLINK 1.9 (Chang et al., Reference Chang, Chow, Tellier, Vattikuti, Purcell and Lee2015) based on a pruned genetic dataset of 93 177 LD-independent SNPs. 5 non-European ancestry samples were removed. Subjects with heterozygosity >3.61 × s.d. in absolute value were also removed (3 samples). At this step of quality control, those SNPs with a Hardy-Weinberg Equilibrium (HWE) p value of <1 × 10−4 or MAF < 1% were excluded. Subsequently, palindromic SNPs and SNPs with a MAF deviation of >10% with respect to European reference populations were also excluded. The final quality-controlled dataset ready for imputation consisted of 164 subjects (94.8% of the initial sample) and 489 135 genetic markers (67.0% of the initial sample). Prephasing and imputation were performed using, respectively, Eagle (Durbin, Reference Durbin2014) and Minimac4 (Das et al., Reference Das, Forer, Schonherr, Sidore, Locke, Kwong and Fuchsberger2016) and the Haplotype Reference Consortium dataset (HRC version r1.1) (McCarthy et al., Reference McCarthy, Das, Kretzschmar, Delaneau, Wood, Teumer and Haplotype Reference2016) hosted on the Michigan Imputation Server (Das et al., Reference Das, Forer, Schonherr, Sidore, Locke, Kwong and Fuchsberger2016). A MAF value of >1% and an imputation quality of R 2 > 0.3 were required for inclusion of the variants into further analyses.

The schizophrenia PRS (PRS-Sz) was calculated using the imputation dosage for each risk allele based on the summary statistics of the latest schizophrenia GWAS (Trubetskoy et al., Reference Trubetskoy, Pardinas, Qi, Panagiotaropoulou, Awasthi and Bigdeli2022). The PRS-CS tool was used to infer posterior SNP effect sizes under continuous shrinkage priors and to estimate the global shrinkage parameter (φ) using a fully Bayesian approach (auto settings) (Ge, Chen, Ni, Feng, & Smoller, Reference Ge, Chen, Ni, Feng and Smoller2019).

Exposome risk score

We applied the Maudsley environmental risk score (MERS) partly modified to compute our exposome risk score for schizophrenia (ERS-Sz). We used four out of the six original variables of the MERS, after eliminating both paternal age (not available in this study) and ethnic origin (at the time of the study there was no migrant population in Spain and all participants were natives of Spain). Place of birth (urbanicity) was stratified as low (rural populations and towns with <10 000 inhabitants), medium (towns and cities with <100 000 inhabitants) and high (born in Pamplona, which has >100 000 inhabitants). Obstetric complications (OCs) were evaluated by means of the Lewis-Murray scale (LMS) (Lewis, Owen, & Murray, Reference Lewis, Owen, Murray, SC and CA1989) and classified as probable or definitive. We used the LMS total score to account for the significant heterogeneity in studies using only low birth weight (2500 g), which might be attributable to ‘population shifts’ across studies (Cannon, Jones, & Murray, Reference Cannon, Jones and Murray2002). Moreover, the effect sizes of the relationships between OCs and schizophrenia are generally small with odds ratios less than 2 (Cannon et al., Reference Cannon, Jones and Murray2002; Etchecopar-Etchart, Mignon, Boyer, & Fond, Reference Etchecopar-Etchart, Mignon, Boyer and Fond2022). And evidence from the last two decades provided updated consistency and magnitude of association of numerous OCs contributing to increase the risk for psychotic disorders (Davies et al., Reference Davies, Segre, Estradé, Radua, De Micheli, Provenzani and Fusar-Poli2020).

Cannabis use at inception of the study was evaluated by means of the European version of the Addiction Severity Index (Kokkevi & Hartgers, Reference Kokkevi and Hartgers1995; McLellan et al., Reference McLellan, Kushner, Metzger, Peters, Smith, Grissom and Argeriou1992). The intensity of abuse of cannabis before FEP was dichothomized as follows: no exposure (EuropAsi severity profile = 0–1) and little/moderate to high exposure (EuropAsi severity profile = 2–9).

Childhood adversity was evaluated by means of the Global Family Environment Scale (GFES) (Rey et al., Reference Rey, Singh, Hung, Dossetor, Newman, Plapp and Bird1997), which indexes the global quality of the environment in which the child was raised. Raters use a hypothetical continuum from 1 (e.g. severe abuse and deprivation) to 90 (e.g. stable and secure nurturing) and formulate a single score reflecting the lowest quality of family environment to which the child has been exposed. We used the cut-off score of ⩽60 sustained during childhood to account for scoring poor childhood adversity. As the GFES followed a similar metric that Global Assessment of Functioning (GAF) (Pedersen, Urnes, Hummelen, Wilberg, & Kvarstein, Reference Pedersen, Urnes, Hummelen, Wilberg and Kvarstein2018), scores below 60 are indicative of moderate/severe impairment in the quality of the family environment (Rey, Walter, Plapp, & Denshire, Reference Rey, Walter, Plapp and Denshire2000).

Familial load score for schizophrenia

Familial load for schizophrenia disorders was assessed in the first-degree relatives of the participants by means of the Family History Research Diagnostic Criteria (Andreasen, Endicott, Spitzer, & Winokur, Reference Andreasen, Endicott, Spitzer and Winokur1977) (FH-RDC) administered at baseline and follow-up interviews. The combined information from the two interviews was used to rate the family history. The familial load score for schizophrenia (FLS-Sz) should be regarded as a simple extension of the family history positive–negative dichotomy to take account of family size and age structure (Verdoux et al., Reference Verdoux, van Os, Sham, Jones, Gilvarry and Murray1996).

The FLS-Sz is a continuous measure of liability log-transformed to characterize the level of psychiatric illness. A FLS-Sz score of 0 indicates that there is an equal chance that the illness will be familial or sporadic; a positive score indicates a higher chance that it will be familial, and a negative value suggests a higher chance that it will be sporadic (Cuesta et al., Reference Cuesta, Zarzuela, Sanchez-Torres, Lorente-Omenaca, Moreno-Izco, Sanjuan and Peralta2015). The FLS-Sz was dichotomized using the highest quartile to consider a high familial load for schizophrenia (FLS-Sz75).

Statistical analysis

Sociodemographic and genetic variables were summarized using descriptive statistics (mean and standard deviation; frequency and percentage) for the whole sample and by group according to the outcome (recovered/not recovered). The PRS-Sz, ERS-Sz and FLS-Sz variables were categorized using the 75th quantile of the original continuous variables, with the highest quartiles (>75%) considered as genetic and exposure risk states. Correlation between individual environmental, genetic and family load exposures was also assessed using linear regression, both crude and adjusted by age and gender, and with the categorized version using logistic regression. Logistic regression models were fitted to test univariate associations between these categorical variables and evolution. Models were additionally adjusted by age and gender, and when the PRS-Sz was included, two ancestry components (PC1 and PC2) were added as covariates to control for potential hidden population substructure issues despite the European descent of all samples included. To test the joint effect of environmental and genetic scores, they were included additively and the RERI was estimated. The same procedure was used to test the joint effect of the family–environment interaction. A RERI value of more than zero indicates a positive deviation from additivity and was considered significant when the 95% confidence interval (CI) did not contain zero. The RERI was estimated using the epiR library in R (version 4.1.3). To estimate the impact of each term of the fitted models, the caret library was used, which calculate the variable importance and scales it to have a maximum value of 100. Additionally, a sensitivity analysis was conducted using the original continuous version of the three scores (PRS-Sz, ERS-Sz and FLS-Sz) and bootstrapping for estimation of 95%CI, as in Knol, van der Tweel, Grobbee, Numans, and Geerlings (Reference Knol, van der Tweel, Grobbee, Numans and Geerlings2007).

Ethics

The SEGPePs study was examined and approved by the clinical research ethical committee of Navarra (2016/71). All clinical and research procedures of this study fulfilled the ethical standards of the relevant national and institutional committees on human experimentation and of the Helsinki Declaration of 1975, as revised in 2008.

Results

The final long-term follow-up SEGPEPs cohort comprised 243 patients (a 47.6% retention percentage from the initial baseline sample of 510 patients). For the present analysis, we included the whole follow-up sample for the ERS-Sz and FLS-Sz (n = 243; 137 males, 106 females; mean age = 48.52 ± 10.45) but only 164 patients (95 males, 69 females; mean age = 48.46 ± 10.89) had the genotype available and were included in the present analysis. There were no significant differences in baseline demographic and clinical characteristics between patients with and without a PRS (Table 1). After a 21-year FEP follow-up, 128 (52.7%) patients showed functioning recovery, as seen by a SOFAS score of ⩾61. Variables related to poor long-term outcome were FLS > Sz752 = 0.01, p = 0.005) and ERS > Sz752 = 3.86, p = 0.049), specifically the obstetric complications (χ2 = 10.69, p = 0.001) and childhood adversity (χ2 = 17.42, p = 0.001) components (see Table 2).

Table 1. Demographic, clinical and diagnostic characteristics of SEGPEPs sample at the long-term follow-up (n = 243) and those with PRS available (N = 164)

CPZ, Chlorpromazine equivalent doses; SAPS, Scale for the Assessment of Positive Symptoms; SANS, Scale for the Assessment of Negative Symptoms; SOFAS, Social and Occupational Functioning Assessment Scale; WAT, Word Accentuation Test.

a Functioning recovery = SOFAS sustained over the last year ⩾61. NA, Non applicable.

Table 2. Differences of polygenic risk score, exposome risk score and family load of schizophrenia between good- and poor long-term outcome patients

PRS, Polygenic risk score; ERS, Exposome risk score; FLS, Family load score.

a Urbanicity was stratified as low (including rural population and towns of less than 10.000 inhabitants) and medium to high cities.

b Cannabis use was stratified as no exposure and moderate to high exposure.

c Childhood adversity was stratified as a cut-off score of ⩽60 sustained during childhood in the Global Family Environment Scale (GFES)31.

The association assessment between exposures showed that PRS-Sz75 and ERS-Sz75 were not associated either when adjusted for age and gender (OR 0.78; 95%CI 0.32–1.88; p = 0.580) or when using the continuous scores (adjusted b = −0.022; 95%CI −0.062 to 0.017; p = 0.269). Similarly, PRS-Sz75 and FLS-Sz75 were not associated, either when adjusted for age and gender (OR 0.74; 95%CI 0.31–1.75; p = 0.493) or when using the continuous score (adjusted b = −0.018; 95%CI −0.051 to 0.015; p = 0.283). The association between FLS-Sz75 and ERS-Sz75 was close to the limit of statistical significance (age and gender adjusted OR 1.69; 95%CI 0.88–3.22; p = 0.112), but not when using the continuous scores (adjusted b = 0.010; 95%CI −0.114 to 0.134; p = 0.876).

PRS-Sz75 does not discriminate between long-term recovered and not recovered cases using age and gender adjusted logistic regression analysis (OR 1.17; 95%CI 0.57–2.41) (see online Supplementary Table S1). ERS-Sz75 discriminates between these two groups (age and gender adjusted: OR 1.98; 95%CI 1.09–3.59; p = 0.026; Nagelkerke R 2 = 0.031). FLS-Sz75 also discriminates between these two groups (age and gender adjusted: OR 2.50; 95%CI 1.36–4.58; p = 0.003; Nagelkerke R 2 = 0.057) (see online Supplementary Table S1). That is, to have high environmental risk (ERS-Sz > Sz75) duplicates the risk of not recovering at follow-up, which is a similar effect to having a high familial load score (FLS-Sz > FLS-Sz75); however, a high PRS-Sz did not have a significant impact on this recovery.

There was no evidence of a positive additive interaction between PRS-Sz75 and ERS-Sz75 after (age and gender adjusted RERI = 1.06; 95%CI −3.72 to 5.84; see Table 3 and Fig. 1a for adjusted data and online Supplementary Table S2 for unadjusted analyses). Similarly, there was no evidence of a positive additive interaction between FLS-Sz75 and ERS-Sz75 (age and gender adjusted RERI = −0.24; 95%CI −4.22 to 3.72) (see Table 3, online Supplementary Tables S2 and Fig. 1b). Sensitivity analyses using continuous PRS-Sz and ES-Sz variables confirmed the absence of interaction (see online Supplementary Table S3).

Fig. 1. (a) Additive effect of ERS-ExpoZ75 and PRS-SCZ75 on poor long-term outcome. (b) Additive effect of ERS-ExpoZ75 and Load-SZ75 on poor long-term outcome. RERI, relative excess risk due to interaction; ERS-ExpoZ75, Exposome risk score (75% cut-point); PRS-SCZ75, polygenic risk score (75% cut-point); Load-SZ75, Family Load (75% cut-point).

Table 3. Gene-environment interaction and family-environment interaction on poor long-term outcome based on logistic regression models

CI, Confidence interval; ERS, Exposome risk score; PRS, polygenic risk score; FLS, Family load score; RERI, Relative excess risk due to interaction. Adjusted for sex and age, and if PRS was included, adjusted additionally for two PCs; Variable Importance: Importance of the variable estimated with caret package.

In short, our best-fitting model could be considered the additive model that includes FLS-Sz, PRS-Sz and ERS-Sz adjusted for age and gender, and whenever PRS-Sz was included, two ancestry variables PC1 and PC2 were added as covariates. PRS-Sz, ERS-Sz and FLS-Sz additively increment the risk of poor long-term outcome. And when the risk factors are considered together, they provide age-gender adjusted ORs of 1.30 (95% CI 0.62–2.73) for PRS-Sz75, 2.06 (95%CI 0.94–4.50) for ERS-Sz75 and 1.96 (95%CI 0.93–4.15; R 2 = 0.081) for FLS-Sz75 (see online Supplementary Table S1). The variable importance for PRS-Sz75 is 0.70, for ERS-Sz75 is 1.81 and for FLS-Sz75 is 1.76.

Results of the additional analyses examining the effects and interactions between the specific dimensions of ERS-Sz with PRS-Sz75 and FLS-Sz75 on the course of the disease are given in online Supplementary Table S4. The results confirm the absence of interaction terms between the different exposure scores when assessing the effect on poor long-term outcome and the importance of both obstetric complications and childhood adversity, together with the FLS-Sz, on this endpoint. A model including all variables without interactions identified that PRS-Sz75 was not significant (OR 1.35; 95%CI 0.64–2.85; p = 0.429). Hence, the final multivariate logistic regression model fitted included age and gender for adjustment, obstetric complications (OR 2.28; 95%CI 1.03–5.05; p = 0.042), childhood adversity (OR 2.31; 95%CI 1.23–4.34; p = 0.009) and FLS-Sz75 (OR 2.02; 95%CI 1.07–3.81; p = 0.029; Nagelkerke R 2 = 0.141). The variance importance for the exposure dimensions were 2.03 for obstetric complications, 2.61 for childhood adversity and 2.18 for FLS-Sz75.

Discussion

Three main findings were found in this study. First, the FLS-Sz for schizophrenia showed a higher predictive power of poor long-term functioning of FEP patients than the ERS-Sz and PRS-Sz; and the ERS-Sz was higher than the PRS-Sz. Second, the PRS-Sz did not discriminate significantly between recovered and non-recovered FEP patients in the long term. Third, there were no significant interactions between PRS-Sz and ERS-Sz or between FLS-Sz and ERS-Sz regarding the long-term functioning of FEP patients. Therefore, the three risk factors seem to be better understood within additive models.

Long-term outcome studies in schizophrenia revealed great heterogeneity due to differences in populations, assessment methods and designs. However, there is strong evidence that full recovery in schizophrenia is relatively rare (13.5%) (Jaaskelainen et al., Reference Jaaskelainen, Juola, Hirvonen, McGrath, Saha, Isohanni and Miettunen2013) and nearly half of patients experience only moderate recovery (Morgan et al., Reference Morgan, Waterreus, Ambrosi, Badcock, Cox, Watts and Jablensky2021). Less evidence has been reported in FEP patients although remission and recovery rates are more favorable than in schizophrenia patients (Alvarez-Jimenez et al., Reference Alvarez-Jimenez, Gleeson, Henry, Harrigan, Harris, Killackey and McGorry2012; Lally et al., Reference Lally, Ajnakina, Stubbs, Cullinane, Murphy, Gaughran and Murray2017; Santesteban-Echarri et al., Reference Santesteban-Echarri, Paino, Rice, Gonzalez-Blanch, McGorry, Gleeson and Alvarez-Jimenez2017). These findings are in agreement with the fact that 53% of our patients showed moderate functional recovery after 21 years of follow-up.

Our findings regarding FLS-Sz are in agreement with consistent evidence demonstrating that a first-degree relative with schizophrenia is the strongest risk factor for developing the same illness (relative risk: 9.9) (Lichtenstein et al., Reference Lichtenstein, Yip, Bjork, Pawitan, Cannon, Sullivan and Hultman2009). Likewise, a positive family history of schizophrenia seems to be a moderate predictor of poor outcome in the long-term follow-up cohorts of schizophrenia (Esterberg, Trotman, Holtzman, Compton, & Walker, Reference Esterberg, Trotman, Holtzman, Compton and Walker2010; Kakela et al., Reference Kakela, Panula, Oinas, Hirvonen, Jaaskelainen and Miettunen2014) and FEP patients (Bromet, Naz, Fochtmann, Carlson, & Tanenberg-Karant, Reference Bromet, Naz, Fochtmann, Carlson and Tanenberg-Karant2005). Nevertheless, a Chinese-based study reported that the predictive value of family history over poor long-term functioning was stronger in the early stages of illness (Ran et al., Reference Ran, Xiao, Zhao, Zhang, Yu, Mao and Chan2018). The presence of first-degree relatives affected by schizophrenia is a complex risk factor implying a strong genetic effect, but it seems necessary also to consider strong shared influences due to the deviance of nurturing, culture and family environment that the psychotic illness caused in affected parents (Niemi, Suvisaari, Haukka, & Lonnqvist, Reference Niemi, Suvisaari, Haukka and Lonnqvist2005). Moreover, this association is not specific because almost any psychiatric disorder in first-degree relatives is associated with an increased risk of schizophrenia (van Os et al., Reference van Os, Kenis and Rutten2010).

There are several studies addressing aggregate scores resulting from a cumulative measure of environmental liability for schizophrenia, namely the MERS (Mas et al., Reference Mas, Boloc, Rodriguez, Mezquida, Amoretti, Cuesta and Group2020; Vassos et al., Reference Vassos, Sham, Kempton, Trotta, Stilo, Gayer-Anderson and Morgan2020), ERS (Pries et al., Reference Pries, Lage-Castellanos, Delespaul, Kenis, Luykx, Lin and Guloksuz2019), polyenviromic risk score (Padmanabhan, Shah, Tandon, & Keshavan, Reference Padmanabhan, Shah, Tandon and Keshavan2017) and psychosis polyrisk score (Oliver et al., Reference Oliver, Spada, Englund, Chesney, Radua, Reichenberg and Fusar-Poli2020). All these measures displayed consistent differences in case–control studies of schizophrenia, high correlations with conversion to psychosis in familial high-risk FEP subjects (Padmanabhan et al., Reference Padmanabhan, Shah, Tandon and Keshavan2017), showing that the accumulation of environmental factors leads to more severe disease (Stepniak et al., Reference Stepniak, Papiol, Hammer, Ramin, Everts, Hennig and Ehrenreich2014) and reporting good risk stratification properties of ERS-Sz in the general population (Pries et al., Reference Pries, Erzin, van Os, Ten Have, de Graaf, van Dorsselaer and Guloksuz2021). Moreover, an accumulation of environmental factors was associated with a proportional lowering of the age at onset of schizophrenia, which is a factor with demonstrated evidence of an association with poor long-term outcome in a cross-sectional study that comprehensively examined a large dataset of schizophrenia patients (Stepniak et al., Reference Stepniak, Papiol, Hammer, Ramin, Everts, Hennig and Ehrenreich2014). In addition, poor functioning in FEP patients was significantly associated with the cumulative environmental load for schizophrenia in a large data set of FEP patients, unaffected siblings and healthy controls from the EUGEI study (Erzin et al., Reference Erzin, Pries, van Os, Fusar-Poli, Delespaul, Kenis and Guloksuz2021b). And these cross-sectional associations were replicated in a relatively short follow-up duration study from the Athens FEP Research Study (Erzin et al., Reference Erzin, Pries, Dimitrakopoulos, Ralli, Xenaki, Soldatos and Stefanis2021a). Both studies emphasized the clinical utility of exposome score for the stratification of potential poor outcome in in FEP.

Despite no previous studies examining the influence of the ERS-Sz over the long-term course of FEP patients, our longitudinal study verifies that the ERS-Sz is a strong predictor of poor long-term outcome in FEP patients. Moreover, we examined the effect of the specific components of the ERS-Sz and found that childhood adversity and obstetric complications contributed negative and significantly to poor long-term outcome in our FEP sample.

The utility in real-world healthcare settings of the PRS-Sz resulting from the GWAS has increased since the OR for being diagnosed with schizophrenia has risen to 2.3, with an OR of 4.6 between the top and bottom 10% of polygenic risk (Zheutlin et al., Reference Zheutlin, Dennis, Karlsson Linner, Moscati, Restrepo, Straub and Smoller2019). However, this effect is not specific because it conveys important pleiotropic effects on related psychiatric disorders (Zheutlin et al., Reference Zheutlin, Dennis, Karlsson Linner, Moscati, Restrepo, Straub and Smoller2019), and thus cannot provide useful information on the interactions of individual genes with the environment (Vassos et al., Reference Vassos, Kou, Tosato, Maxwell, Dennison, Legge and Murray2022).

Three recent studies used the RERI in schizophrenia spectrum disorders. Two studies (Mas et al., Reference Mas, Boloc, Rodriguez, Mezquida, Amoretti, Cuesta and Group2020; Pries et al., Reference Pries, Dal Ferro, van Os, Delespaul, Kenis, Lin and Guloksuz2020) reported a positive additive interaction between the PRS-Sz and the ERS-Sz. These findings show that the combined effect of both risk factors contributes more than the simple sum of each individual factor for differentiating between FEP patients and healthy controls (Mas et al., Reference Mas, Boloc, Rodriguez, Mezquida, Amoretti, Cuesta and Group2020), and this positive additive interaction also seems to contribute across the extended psychosis phenotype (Pries et al., Reference Pries, Dal Ferro, van Os, Delespaul, Kenis, Lin and Guloksuz2020) . In addition, another study found a significant additive interaction between the PRS-Sz and antecedents of childhood adversity (van Os et al., Reference van Os, Pries, Ten Have, de Graaf, van Dorsselaer, Delespaul and Guloksuz2022). However, no direct comparison was possible with our results because our study design was not focused on the differentiation between patients and healthy subjects, but comprised a dichotomized FEP sample in terms of long-term poor and good outcome.

The PRS-Sz, family psychiatric history and socioeconomic status were consistently related to schizophrenia in a population-based study (Agerbo et al., Reference Agerbo, Sullivan, Vilhjalmsson, Pedersen, Mors, Borglum and Mortensen2015) and a family history of schizophrenia or psychoses was found to be partly mediated through the individual's genetic liability. However, the extent to which the PRS-Sz for schizophrenia might predict the course of the disorder is still uncertain (Binder, Reference Binder2019). Our findings were not in agreement with results from the 20-year follow-up Suffolk County study, which found the PRS-Sz to be significantly predictive of illness severity and significantly associated with higher scores on negative symptoms (avolition) and higher cognitive deficits (Jonas et al., Reference Jonas, Lencz, Li, Malhotra, Perlman, Fochtmann and Kotov2019). The different outcome measures for both studies might account for these differences because they used the Global Assessment Functioning (GAF) scale as a measure of outcome and we used the SOFAS. The SOFAS seems to be more focused than the GAF scale on social and occupational functioning independent of the overall severity of the individual's psychopathological symptoms (Aas, Reference Aas2014).

In addition, we found suggestive but not nominally statistically significant evidence of an additive interaction between the PRS-Sz and the ERS-Sz. It seems that in FEP patients with a high ERS-Sz, the PRS-Sz increased the odds of non-recovery at long-term follow-up, as seen by inspection of the RERI confidence intervals.

While heritability reflects the proportion of overall variability in a population trait that results from additive genetic effects, the presence of familial antecedents of psychosis encompasses a wider context, named transmissibility or familiality, because it also involves the sharing of environmental factors (Kendler & Neale, Reference Kendler and Neale2009).

Taken together, our results support an additive model of familial antecedents of schizophrenia, environmental risk factors and polygenic risk factors as contributors to a poor long-term functional outcome for FEP patients.

Limitations

Our results should be considered while noting several methodological limitations. First, caution is warranted because the size of the sample might not be sufficient to detect genetic and environmental influences and interactions affecting the long-term course of FEP patients. This lack of power is particularly important for PRS-Sz, expected to have modest contributions to the overall explained variability. Second, the three prognostic domains (PRS-Sz, ERS-Sz and FLS-Sz) were derived from their highest quartiles of the whole sample because no healthy control subjects were included in the study. Third, in the ERS-Sz we included the presence of definitive obstetric complications instead of only the birthweight item as in the original MERS. However, most studies used a global score of obstetric complications (Cannon et al., Reference Cannon, Jones and Murray2002; Radua et al., Reference Radua, Ramella-Cravaro, Ioannidis, Reichenberg, Phiphopthatsanee, Amir and Fusar-Poli2018). Moreover, aggregate scores resulting from a cumulative measure of environmental liability have been proposed mainly for schizophrenia but not for FEP patients, although these risk scores have started to be used in other populations, such as individuals at potential risk for psychosis (Oliver et al., Reference Oliver, Spada, Englund, Chesney, Radua, Reichenberg and Fusar-Poli2020). Fourth, we used a single cut-off point in the SOFAS (⩾ 61) to define poor functioning in the final outcome of the 21-year follow-up of our FEP patients. However, the SOFAS is the most employed scale in the long-term follow-up studies of psychosis. Our sample was entirely made up of patients with European ancestry because at the time of the study in Spain there was no migration. Cross-validation of these results in non-European individuals should therefore be undertaken. Finally, the size of our genotyped sample (n = 164) and the use of dichotomized risk scores might have reduced the power for even detecting its main effects and future studies will be needed to replicate our findings in larger samples.

Supplementary material

The supplementary material for this article can be found at https://doi.org/10.1017/S0033291723000351

Financial support

This work was supported by the Government of Navarra (grants 17/31 and 18/41) and by the Carlos III Health Institute (FEDER Funds) from the Spanish Ministry of Economy and Competitivity (16/2148 and 19/1698).

Conflict of interest

The authors reported no conflicts of interest.

Footnotes

*

SEGPEPs Group: A. Ballesteros10, R. Hernández11, L. Janda2,8, R. Lorente2, D. Peralta2,8, M. Ribeiro1,2 and A. Rosero8

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Figure 0

Table 1. Demographic, clinical and diagnostic characteristics of SEGPEPs sample at the long-term follow-up (n = 243) and those with PRS available (N = 164)

Figure 1

Table 2. Differences of polygenic risk score, exposome risk score and family load of schizophrenia between good- and poor long-term outcome patients

Figure 2

Fig. 1. (a) Additive effect of ERS-ExpoZ75 and PRS-SCZ75 on poor long-term outcome. (b) Additive effect of ERS-ExpoZ75 and Load-SZ75 on poor long-term outcome. RERI, relative excess risk due to interaction; ERS-ExpoZ75, Exposome risk score (75% cut-point); PRS-SCZ75, polygenic risk score (75% cut-point); Load-SZ75, Family Load (75% cut-point).

Figure 3

Table 3. Gene-environment interaction and family-environment interaction on poor long-term outcome based on logistic regression models

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