Hostname: page-component-78c5997874-v9fdk Total loading time: 0 Render date: 2024-11-20T01:03:02.185Z Has data issue: false hasContentIssue false
  • English
  • Français

Identification of red rice, rice, and hybrid populations using microsatellite markers

Published online by Cambridge University Press:  20 January 2017

David R. Gealy ,
Thomas H. Tai  and
Clay H. Sneller
Thomas H. Tai
Affiliation:
USDA-ARS, Dale Bumpers National Rice Research Center, P.O. Box 1090, Stuttgart, AR 72160
Clay H. Sneller
Affiliation:
Department of Agronomy, University of Arkansas, Fayetteville, AR 72701
Get access Rights & Permissions [Opens in a new window]

Abstract

Red rice is a major weed in rice production in the southern United States. Red rice and rice intercross because they are the same species. Our objectives were to determine the genetic diversity represented by accessions of red rice and to identify DNA markers that might be useful in identifying hybrids between red and cultivated rice. Red rice accessions were collected from Arkansas and other rice-producing states. Seventy-nine red rice accessions, 10 known or putative hybrid derivatives of red rice and cultivated rice (RC hybrids), and seven rice cultivars were analyzed using microsatellite DNA markers developed for cultivated rice. Microsatellite markers differentiated awned and awnless red rice accessions, six of the seven rice cultivars, and all 10 RC hybrids tested. Thus, these markers were useful in identifying red rice types and RC hybrids.

Keywords

Red rice, Oryza sativa L. ORYSArice, Oryza sativa L.AccessionbiotypeDNA fingerprintinggenetic distancehybridoutcrossingpolymorphismsimple sequence repeatSSR
Type
Research Article
Information
Weed Science , Volume 50 , Issue 3 , June 2002 , pp. 333 - 339
Copyright
Copyright © Weed Science Society of America 

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

References

Literature Cited

Beachell, H. M., Adair, C. R., Jodon, N. E., Davis, L. L., and Jones, J. 1938. Extent of natural crossing in rice. J. Am. Soc. Agron. 30:743–753.Google Scholar
Bennett, M. D. and Leitch, I. J. 1997. Nuclear DNA amounts in angiosperms—583 new estimates. Ann. Bot. 80:169–196.Google Scholar
Bridges, D. C. and Baumann, P. A. 1992. Weeds causing losses in the United States. Pages 75–147 In Bridges, D. C., ed. Crop Losses Due to Weeds in the United States. Champaign, IL: Weed Science Society of America.Google Scholar
Chen, X., Temnykh, S., Xu, Y., Cho, Y. G., and McCouch, S. R. 1997. Development of a microsatellite framework map providing genomewide coverage in rice (Oryza sativa L.). Theor. Appl. Genet. 95:553–567.Google Scholar
Cho, Y. C., Chung, T. Y., and Suh, H. S. 1995. Genetic characteristics of Korean weedy rice (Oryza sativa L.) by RFLP analysis. Euphytica 86:103–110.CrossRefGoogle Scholar
DoLago, A. A. 1982. Characterization of Red Rice (Oryza sativa L.) Phenotypes in Mississippi. Ph.D. dissertation. Mississippi State University, Department of Agronomy. 143 p.Google Scholar
Dowler, C. C. 1997. Weed survey—southern states: grass crops subsection. Proc. South. Weed Sci. Soc. 50:227–246.Google Scholar
Estorninos, L. E. Jr. 2000. Interference and Genetic Characterization of Red Rice (Oryza sativa L.) and rice (O. sativa). Ph.D. dissertation. University of Arkansas. 138 p.Google Scholar
Estorninos, L. E. Jr., Burgos, N. R., Gealy, D. R., Stewart, J. M., and Talbert, R. E. 2000. Genetic characterization of red rice populations using molecular markers. Pages 76–84 In Norman, R. J. and Beyrouty, C. A., eds. B. R. Wells Rice Research Studies—1999. Series 476. Arkansas: Arkansas Agricultural Experiment Station.Google Scholar
Gealy, D. R. and Black, H. L. 1998. Activity of glufosinate (Liberty) against red rice biotypes in glufosinate-resistant Gulfmont rice. Pages 41–48 In Norman, R. J. and Johnson, T. H., eds. B. R. Wells Rice Research Studies—1997. Series 460. Arkansas: Arkansas Agricultural Experiment Station.Google Scholar
Gealy, D. R. and Black, H. L. 1999. Germination, growth, and photosynthesis response of red rice (Oryza sativa L.) biotypes to chilling temperature. Pages 66–72 In Norman, R. J. and Johnson, T. H., eds. B. R. Wells Rice Research Studies—1998. Series 468. Arkansas: Arkansas Agricultural Experiment Station.Google Scholar
Gealy, D. R., Dilday, R. H., Baldwin, F. L., and Black, H. L. 1999. Imazethapyr (‘Pursuit’) effect on red rice (Oryza sativa L.) biotypes. Pages 79–89 In Norman, R. J. and Johnson, T. H., eds. B. R. Wells Rice Research Studies—1998. Series 468. Arkansas: Arkansas Agricultural Experiment Station.Google Scholar
[GRIN] Germplasm Resources Information Network. 2000. U.S. Department of Agriculture, Washington. Web page: http://www.ars-grin.gov. Assessed: April 2001.Google Scholar
Gizlice, Z., Carter, T. E. Jr., Gerig, T. M., and Burton, J. W. 1996. Genetic diversity patterns in north American public soybean cultivars based on coefficient of parentage. Crop Sci. 36:753–765.Google Scholar
Helms, R. S. and Slaton, N. 1994. Rice stand establishment. Pages 17–20 In Helms, R. S., ed. Rice Production Handbook. MP 192. Little Rock, AR: University of Arkansas Cooperative Extension Service.Google Scholar
Hoagland, R. E. and Paul, R. N. 1978. A comparative SEM study of red rice and several commercial rice (Oryza sativa) varieties. Weed Sci. 26:619–625.Google Scholar
Izawa, T. and Shimamoto, K. 1996. Becoming a model plant: the importance of rice to plant science. Trends Plant Sci. 1:95–99.CrossRefGoogle Scholar
Jia, Y., Correll, J. C., Lee, F. N., Eizenga, G. C., Yang, Y., Gealy, D. R., Valent, B., and Zhu, Q. 2001. Understanding molecular interaction mechanisms of the Pi-ta rice resistance gene and the rice blast pathogen. Proc. Phytopathol. Soc. 91 (Suppl.): S44.Google Scholar
Langevin, S. A., Clay, K., and Grace, J. B. 1990. The incidence and effects of hybridization between cultivated rice and its related weed red rice (Oryza sativa L.). Evolution 44:1000–1008.CrossRefGoogle ScholarPubMed
Lee, F. N., Gealy, D. R., and Dilday, R. H. 2000. Differential response of United States Oryza sativa (red rice) accessions to races of Pyricularia grisea . Pages 94–101 In Norman, R. J. and Beyrouty, C. A., eds. B. R. Wells Rice Research Studies—1999. Series 476. Arkansas: Arkansas Agricultural Experiment Station.Google Scholar
Mackill, D. J. 1995. Classifying japonica rice cultivars with RAPD markers. Crop Sci. 35:889–894.CrossRefGoogle Scholar
McCouch, S. 2001. Cornell microsatellite RM markers and their primers. Web page: www.gramene.org. Assessed: March 8, 2002.Google Scholar
McCouch, S. R., Chen, X., Panaud, O., Temnykh, S., Xu, Y., Cho, Y. G., Huang, N., Ishii, T., and Blair, M. 1997. Microsatellite marker development, mapping and applications in rice genetics and breeding. Plant Mol. Biol. 35:89–99.CrossRefGoogle Scholar
Mitten, D. E., Gealy, D. R., and Rutger, J. N. 2001. Gene flow between red rice (Oryza sativa) and herbicide resistant rice (Oryza sativa): implications for weed management. Weed Sci. Soc. Am. Abstr. 41:55–56.Google Scholar
Noldin, J. A., Chandler, J. M., Ketchersid, M. L., and McCauley, G. N. 1999a. Red rice (Oryza sativa) biology. II. Ecotype sensitivity to herbicides. Weed Technol. 13:19–24.Google Scholar
Noldin, J. A., Chandler, J. M., and McCauley, G. N. 1999b. Red rice (Oryza sativa) biology. I. Characterization of red rice ecotypes. Weed Technol. 13:12–18.Google Scholar
Oard, J., Cohn, M., Linscombe, S., Gealy, D., and Gravois, K. 2000. Field evaluation of seed production, shattering, and dormancy in hybrid populations of transgenic rice (Oryza sativa) and the weed, red rice (Oryza sativa). Plant Sci. 157:13–22.Google Scholar
Oard, J. H., Linscombe, S. D., Braverman, M. P., et al. 1996. Development, field evaluation, and agronomic performance of transgenic herbicide resistant rice. Mol. Breed. 2:359–368.CrossRefGoogle Scholar
Panaud, O., Chen, X., and McCouch, S. R. 1996. Development of microsatellite markers and characterization of simple sequence length polymorphism (SSLP) in rice (Oryza sativa L.). Mol. Gen. Genet. 252:597–607.Google Scholar
Rutger, J. N. 1992. New world hybridization candidates for cultivated rice. Pages A-21–A-22 In Clegg, M. T., Giddings, L. V., Lewis, C. S., and Barton, J. H., eds. 1993. Rice Biosafety. World Bank Technical Paper. Biotechnology Series No. 1.Google Scholar
Sanders, D. E., Oard, J., and Webster, E. 2000. Preliminary characterization of an imidazolinone rice mutant. Page 152 In Proceedings of the 28th Rice Technical Working Group Meeting. Biloxi, MS.Google Scholar
[SAS] Statistical Analysis Systems. 1999. SAS/STAT User's Guide. Version 8. Cary, NC: Statistical Analysis Systems Institute.Google Scholar
Singh, R. J. and Khush, G. S. 2000. Cytogenetics of rice. Pages 287–311 In Nanda, J. S., ed. Rice Breeding and Genetics—Research Priorities and Challenges. Enfield, NH: Science Publishers.Google Scholar
Sitch, L. A. 1990. Incompatibility barriers operating in crosses of Oryza sativa with related species and genera. Pages 77–93 In Gustafson, J. P., ed. Gene Manipulation in Plant Improvement II: 19th Stadler Genetics Symposium. New York: Plenum Press.Google Scholar
Smith, R. J. Jr. 1979. How to control the hard-to-kill weeds in rice. Weeds Today 10:12–14.Google Scholar
Suh, H. S., Park, S. Z., and Heu, M. H. 1992. Collection and evaluation of Korean red rices I. Regional distribution and seed characteristics. Korean J. Crop Sci. 37:425–430.Google Scholar
Suh, H. S., Sato, Y., and Morishima, H. 1997. Genetic characterization of weedy rice (Oryza sativa L.) based on morpho-physiology, isozymes and RAPD markers. Theor. Appl. Genet. 94:316–321.Google Scholar
Tai, T. H. and Tanksley, S. D. 1990. A rapid and inexpensive method for isolation of total DNA from dehydrated plant tissue. Plant Mol. Biol. Rep. 8:297–303.CrossRefGoogle Scholar
Vaughan, L. K., Ottis, B. V., Prazak-Havey, A. M., Bormans, C. A., Sneller, C., Chandler, J. M., and Park, W. D. 2001. Is all red rice found in commercial rice really Oryza sativa? Weed Sci. 49:468–476.Google Scholar
Vaughan, D. A., Watanabe, H., HilleRisLambers, D., Abdullah Zain, Md., and Tomooka, N. 1999. Weedy rice complexes in direct seeding rice cultures. Pages 277–280 in Proceedings of the International Symposium on ‘World Food Security,’ Kyoto, Japan.Google Scholar
Webster, T. M. 2000. Weed survey—southern states: grass crops subsection. Proc. South. Weed Sci. Soc. 53:247–274.Google Scholar
Xiao, J., Li, J., Grandillo, S., McCouch, S. R., Tanksley, S. D., and Yuan, L. 1996. A wild species contains genes that may significantly increase the yield of rice. Nature 384:223–224.Google Scholar