Hostname: page-component-586b7cd67f-rdxmf Total loading time: 0 Render date: 2024-11-22T19:56:06.069Z Has data issue: false hasContentIssue false

Atomic Force Microscopy Studies on DNA Structural Changes Induced by Vincristine Sulfate and Aspirin

Published online by Cambridge University Press:  17 March 2004

Yi Zhu
Affiliation:
Laboratory of Molecular and Biomolecular Electronics, Southeast University, Nanjing 210096, P.R. China
Hu Zeng
Affiliation:
Model Animal Research Center, Nanjing University, Nanjing 210093, P.R. China
Jianming Xie
Affiliation:
Laboratory of Molecular and Biomolecular Electronics, Southeast University, Nanjing 210096, P.R. China
Long Ba
Affiliation:
Laboratory of Molecular and Biomolecular Electronics, Southeast University, Nanjing 210096, P.R. China
Xiang Gao
Affiliation:
Model Animal Research Center, Nanjing University, Nanjing 210093, P.R. China
Zuhong Lu
Affiliation:
Laboratory of Molecular and Biomolecular Electronics, Southeast University, Nanjing 210096, P.R. China
Get access

Abstract

We report that atomic force microscopy (AFM) studies on structural variations of a linear plasmid DNA interact with various concentrations of vincristine sulfate and aspirin. The different binding images show that vincrinstine sulfate binding DNA chains caused some loops and cleavages of the DNA fragments, whereas aspirin interaction caused the width changes and conformational transition of the DNA fragments. Two different DNA structural alternations could be explained by the different mechanisms of the interactions with these two components. Our work indicates that the AFM is a powerful tool in studying the interaction between DNA and small molecules.

Type
Biological Applications
Copyright
© 2004 Microscopy Society of America

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

References

REFERENCES

Berge, T., Jenkins, N.S., Hopkirk, R.B., Waring, M.J., Edwardson, J.M., & Henderson, R.M. (2002). Structural perturbations in DNA caused by bis-intercalation of ditercalinium visualized by atomic force microscopy. Nucleic Acid Res 30, 29802986.Google Scholar
Coury, J.E., McFail-Isom, L., Williams, L.D., & Bottomley, L.A. (1996). A novel assay for drug-DNA binding mode, affinity, and exclusion number: Scanning force microscopy. Proc Natl Acad Sci USA 93, 1228312286.Google Scholar
Frantz, B., O'Neill, E.A., Ghosh, S., & Kopp, E. (1995). The effect of sodium salicylate and aspirin on NF-κB. Science 270, 20172019.Google Scholar
Gao, R., William, L.D., Egli, M., Rabinovich, D., Chen, S.L., Quigley, G.J., & Rich, A. (1991). Drug-induced DNA repair: X-ray structure of a DNA-ditercalinium complex. Proc Natl Acad Sci USA 88, 24222426.Google Scholar
Krautbauer, R., Pope, L.H., Schrader, T.E., Allen, S., & Gaub, H.E. (2002). Discriminating small molecule DNA binding modes by single molecule force spectroscopy. FEBS Lett 510, 154158.Google Scholar
Melnyk, S., Pogribna, M., Miller, B.J., Basnakian, A.G., Pogribny, I.P., & James, S.J. (1999). Uracil misincorporation, DNA strand breaks, and gene amplification are associated with tumorigenic cell transformation in folate deficient/repleted Chinese hamster ovary cells. Cancer Lett 146, 3544.Google Scholar
Nagarajan, R., Liu, W., Kumar, J., Tripathy, S.K., Bruno, F.F., & Samuelson, L.A. (2001). Manipulating DNA conformation using intertwined conducting polymer chains. Macromolecules 34, 39213927.Google Scholar
Nakao, H., Hayashi, H., Yoshino, T., Sugiyama, S., Otobe, K., & Ohtani, T. (2002). Development of novel polymer-coated substrates for straightening and fixing DNA. Nano Lett 2, 475479.Google Scholar
Neault, J.F., Naoui, M., Manfait, M., & Tajmir-Riahi, H.A. (1996). Aspirin–DNA interaction studied by FTIR and laser Raman difference spectroscopy. FEBS Lett 382, 2630.Google Scholar
Pietrasanta, L.I., Smith, B.L., & MacLeod, M.C. (2000). A novel approach for analyzing the structure of DNA modified by benzo[a]pyrene diol epoxide at single-molecule resolution. Chem Res Toxicol 13, 351355.Google Scholar
Pilch, D.S., Yu, C., Makhey, D., LaVoie, E.J., Srinivasan, A.R., Olson, W.K., Sauers, R.R., Breslauer, K.J., Geacintov, N.E., & Liu, L.F. (1997). Minor groove-directed and intercalative ligand–DNA interactions in the poisoning of human DNA topoisomerase-1 by protoberberine analogs. Biochemistry 36, 1254212553.Google Scholar
Rivetti, C. & Codeluppi, S. (2001). Accurate length determination of DNA molecules visualized by atomic force microscopy: Evidence for a partial B- to A-form transition on mica. Ultramicroscopy 87, 5566.Google Scholar
Waterhouse, D.N., Dos Santos, N., Mayer, L.D., & Bally, M.B. (2001). Drug-drug interactions arising from the use of liposomal vincristine in combination with other anticancer drugs. Pharm Res 18, 13311335.Google Scholar