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‘Pliocardia' krylovata, a new species of vesicomyid clam from cold seeps along the Costa Rica Margin

Published online by Cambridge University Press:  22 July 2011

Alanna M. Martin  and
Shana K. Goffredi
Alanna M. Martin
Affiliation:
Department of Biology, Occidental College, 1600 Campus Road, Los Angeles, CA 90041, USA
Shana K. Goffredi*
Affiliation:
Department of Biology, Occidental College, 1600 Campus Road, Los Angeles, CA 90041, USA
*
Correspondence should be addressed to: S.K. Goffredi, Department of Biology, Occidental College, 1600 Campus Road, Los Angeles, CA 90041, USA email: [email protected]
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Abstract

‘Pliocardia' krylovata, sp. nov. (Bivalvia: Vesicomyidae: Pliocardiinae) is described from cold seeps off the coast of the Nicoya Peninsula, Costa Rica (700–1000 m depth). The phylogenetic position of ‘P.' krylovata was assessed by both morphological comparisons as well as nucleotide data from the cytochrome c oxidase I gene. Within the vesicomyids, ‘P.' krylovata belongs to the Pliocardiinae and its closest relative is ‘Calyptogena' ponderosa, which also bears some morphological resemblance to the genus Pliocardia, perhaps suggesting a need for reanalysis of not only its generic designation, but also the entire Pliocardiinae subfamily. ‘P.' krylovata has morphological similarities to ‘Pliocardia' bowdeniana and ‘Vesicomya' crenulomarginata, recently reassigned to the genus Pliocardia, including a thick shell, obvious rostrum, pointed posterior end, and a sculptured shell with concentric ribs on the outer surface, to name a few. It is morphologically distinguished, however, by having a complex pallial sinus and remarkably deep escutcheon.

Keywords

Pliocardiadeep-seachemoautotrophic symbiontsVesicomyidae
Type
Research Article
Information
Journal of the Marine Biological Association of the United Kingdom , Volume 92 , Issue 5 , August 2012 , pp. 1127 - 1137
Copyright
Copyright © Marine Biological Association of the United Kingdom 2011

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References

REFERENCES

Altschul, S.F., Madden, T.L., Schäffer, A.A., Zhang, J., Zhang, Z., Miller, W. and Lipman, D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research 25, 3389–3402.Google Scholar
Amano, K. and Kiel, S. (2007) Fossil vesicomyid bivalves from the North Pacific region. Veliger 49, 270–293.Google Scholar
Amano, K. and Little, C.T.S. (2005) Miocene whale-fall community from Hokkaido, northern Japan, Palaeogeography, Palaeoclimatology, Palaeoecology 215, 345–356.CrossRefGoogle Scholar
Amann, R.I., Binder, B.J., Olson, R.J., Chisholm, S.W., Devereux, R. and Stahl, D.A. (1990) Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Applied and Environmental Microbiology 56, 1919–1925.CrossRefGoogle ScholarPubMed
Baco, A.R., Smith, C.R., Roderick, G.K., Peek, A.S. and Vrijenhoek, R.C. (1999) Molecular identification of vesicomyid clams associated with whale-falls on the California Slope. Marine Ecology Progress Series 182, 137–147.Google Scholar
Barry, J.P., Green, H.G., Orange, D.L., Baxter, C.H., Robinson, B.H., Kochevar, R.E., Nybakken, J.W., Reed, D.L. and McHugh, C.M. (1996) Biology and geologic characteristics of cold seeps in Monterey Bay, California. Deep-Sea Research Part II 43, 1739–1762.CrossRefGoogle Scholar
Barry, J.P. and Kochevar, R.E. (1999) Calyptogena diagonalis, a new vesicomyid bivalve from subduction zone cold seeps in the eastern north pacific. Veliger 42, 117–123.Google Scholar
Beets, C. (1942) Beiträge zur Kenntnis der angeblich oberoligocänen Mollusken-Fauna der Insel Buton, Niederländisch Ostindien. Leidsche Geologische Mededelingen 13, 255–328.Google Scholar
Bennett, B.A., Smith, C.R., Glaser, B. and Maybaum, H.L. (1994) Faunal community structure of a chemoautotrophic assemblage on whale bones in the deep northeast Pacific Ocean. Marine Ecology Progress Series 108, 205–223.CrossRefGoogle Scholar
Boss, K.J. (1967) A new species of Vesicomya from the Caribbean Sea (Mollusca: Bivalvia; Vesicomyidae). Breviora, Museum of Comparative Zoology 266, 1–6.Google Scholar
Boss, K.J. (1968) New species of vesicomyidae from the Gulf of Darien, Caribbean Sea (Bivalvia; Mollusca). Bulletin of Marine Science 18, 731–748.Google Scholar
Boss, K.J. and Turner, R.D. (1980) The giant white clam from the Galapagos Rift, Calyptogena magnifica species novum. Malacologia 20, 161–194.Google Scholar
Cavanaugh, C.M. (1983) Symbiotic chemoautotrophic bacteria in marine invertebrates from sulphide-rich habitats. Nature 302, 58–61.CrossRefGoogle Scholar
Cosel, R.v. and Olu, K. (2008) A new genus and new species of Vesicomyidae (Mollusca. Bivalvia) from cold seeps on the Barbados accretional prism, with comments on other species. Zoosystema 30, 924–944.Google Scholar
Cosel, R.v. and Olu, K. (2009) Large Vesicomyidae (Mollusca: Bivalvia) from cold seeps in the Gulf of Guinea off the coasts of Gabon, Congo and northern Angola. Deep-Sea Research Part II 56, 2350–2379.CrossRefGoogle Scholar
Cosel, R.v. and Salas, C. (2001) Vesicomyidae (Mollusca: Bivalvia) of the genera Vesicomya, Waisiuconcha, Issoropodon and Callogonia in the eastern Atlantic and the Mediterranean. Sarsia 86, 333–366.CrossRefGoogle Scholar
Dall, W.H. (1886) Report on the Mollusca. Part I. Brachiopoda and Pelecypoda. Reports on the results of dredging, under the supervision of Alexander Agassiz, in the Gulf of Mexico (1877–78) and in the Caribbean Sea (1879–80), by the U.S. Coast Survey steamer ‘Blake,' Liet.-Commander C.D. Sigsbee, U.S.N., and Commander J.R. Bartlett, U.S.N., commanding XXIX. Bulletin of the Museum of Comparative Zoology at Harvard University 12, 171–318.Google Scholar
Dall, W.H. (1889) Report on the Mollusca. Part II. Gastropoda and Scaphopoda. Reports on the results of dredging, under the supervision of Alexander Agassiz, in the Gulf of Mexico (1877–1878) and in the Caribbean Sea (1879–1880), by US coast survey steamer ‘Blake', 19. Bulletin of the Museum of Comparative Zoology at Harvard University 18, 1–492.Google Scholar
Dall, W.H. (1903) Contributions to the Tertiary of Florida with especial reference to the silex-bed of Tampa and the Pliocene beds of the Caloosahatchie River, including in many cases a complete revision of the generic groups treated of and their American Tertiary species. Part VI. Concluding the work. Transactions of the Wagner Free Institute of Science of Philadelphia 3, 1219–1654.Google Scholar
Dall, W.H. and Simpson, C.T. (1901) The Mollusca of Porto Rico. Bulletin of the United States Fish and Fisheries Commission 20, 351–524.Google Scholar
Fiala-Medioni, A. and LePennec, M. (1988) Structural adaptations in the gill of the Japanese subduction zone bivalves (Vesicomyidae) using morphology and genomic DNA. Invertebrate Biology 118, 149–164.Google Scholar
Fisher, C.R. (1990) Chemoautotrophic and methanotrophic symbioses in marine invertebrates. Reviews in Aquatic Sciences 2, 399–436.Google Scholar
Goffredi, S.K., Hurtado, L.A., Hallam, S. and Vrijenhoek, R.C. (2003) Evolutionary relationships of deep-sea vent and cold seep clams (Mollusca: Vesicomyidae) of the ‘pacifica/lepta' species complex. Marine Biology 142, 311–320.Google Scholar
Goffredi, S.K., Paull, C.K., Fulton-Bennett, K., Hurtado, L.A. and Vrijenhoek, R.C. (2004) Unusual benthic fauna associated with a whale fall in Monterey Canyon, California. Deep-Sea Research Part I 51, 1295–1306.CrossRefGoogle Scholar
Kiel, S. (2010) The fossil record of vent and seep mollusks. In Kiel, S. (ed.) The vent and seep biota: aspects from microbes to ecosystems. Dordrecht, Heidelberg, London and New York: Springer, pp. 255–277.CrossRefGoogle Scholar
Kojima, S., Segawa, R. and Ohta, S. (1995) Molecular evidence that Calyptogena laubieri (Bivalvia: Vesicomyidae) is a valid species. Venus: Japanese Journal of Malacology 54, 145–156.Google Scholar
Kojima, S., Fujikura, K. and Okutani, T. (2004) Multiple trans-Pacific migrations of deep-sea vent/seep-endemic bivalves in the family Vesicomyidae. Molecular Phylogenetics and Evolution 32, 396–406.Google Scholar
Krylova, E.M. and Janssen, R. (2006) Vesicomyidae from Edison Seamount (South West Pacific: Papua New Guinea: New Ireland fore-arc basin). Archiv für Molluskenkunde 135, 231–261.Google Scholar
Krylova, E.M. and Moskalev, L.I. (1996) Ectenagena extenta, a new species of vesicomyid bivalve from Monterey Bay, California. Ruthenica 6, 1–10.Google Scholar
Krylova, E.M. and Sahling, H. (2006) Recent bivalve molluscs of the genus Calyptogena (Vesicomyidae). Journal of Molluscan Studies 72, 359–395.Google Scholar
Krylova, E.M. and Sahling, H. (2010) Vesicomyidae (Bivalvia): current taxonomy and distribution. PLoS ONE v5, e9957.CrossRefGoogle ScholarPubMed
Lane, D.J. (1991) 16S/23S rRNA sequencing. In Stackebrandt, E. and Goodfellow, M. (eds) Nucleic acid techniques in bacterial systematics. New York: John Wiley & Sons, pp. 115–175.Google Scholar
Manz, W., Amann, R., Ludwig, W., Wagner, M. and Schleifer, K.-H. (1992) Phylogenetic oligonucleotide probes for the major subclasses of proteobacteria: problems and solutions. Systematic and Applied Microbiology 15, 593–600.CrossRefGoogle Scholar
Mau, S., Sahling, H., Rehder, G., Linke, P. and Suess, E. (2006) Seafloor observations and methane plumes of mud extrusions along the erosive convergent margin of Costa Rica. Marine Geology 225, 129–144.CrossRefGoogle Scholar
Newton, I.L.G., Woyke, T., Auchtung, T.A., Dilly, G.F., Dutton, R.J., Fisher, M.C., Fontanez, K.M., Lau, E., Stewart, F.J., Richardson, P.M., Barry, K.W., Saunders, E., Detter, J.C., Wu, D., Eisen, J.A. and Cavanaugh, C.M. (2007) The Calyptogena magnifica chemoautotrophic symbiont genome. Science 315, 998–1000.CrossRefGoogle ScholarPubMed
Okutani, T., Fujikura, K. and Kojima, S. (2000) New taxa and review of vesicomyid bivalves collected from the northwest Pacific by deep-sea research systems of Japan Marine Science & Technology Center. Venus: Japanese Journal of Malacology 59, 83–101.Google Scholar
Okutani, T., Kojima, S. and Iwasaki, N. (2002) New and known vesicomyid bivalves recently collected from the western and central Nankai Trough off Shikoku and Honshu, by deep sea research systems of Japan Marine Science and Technology Center. Venus: Japanese Journal of Malacology 61, 129–140.Google Scholar
Peek, A.S., Gustafson, R.G., Lutz, R.A. and Vrijenhoek, R.C. (1997) Evolutionary relationships of deep-sea hydrothermal vent and cold-water seep clams (Bivalvia: Vesicomyidae): results from mitochondrial cytochrome oxidase subunit I. Marine Biology 130, 151–161.CrossRefGoogle Scholar
Peek, A.S., Gaut, B.S., Feldman, R.A., Barry, J.P., Kochevar, R.E., Lutz, R.A. and Vrijenhoek, R.C. (2000) Neutral and nonneutral mitochondrial genetic variation in deep sea clams from the family Vesicomyidae. Journal of Molecular Evolution 50, 141–153.CrossRefGoogle ScholarPubMed
Pernthaler, A. and Pernthaler, J. (2005) Simultaneous fluorescence in situ hybridization of mRNA and rRNA for the detection of gene expression in environmental microbes. Methods in Enzymology 397, 352–371.CrossRefGoogle ScholarPubMed
Sahling, H., Masson, D.G., Ranero, C.R., Hühnerbach, V., Weinrebe, W., Klaucke, I., Bürk, D., Brückmann, W. and Suess, E. (2008) Fluid seepage at the continental margin offshore Costa Rica and southern Nicaragua. Geochemistry, Geophysics, Geosystems 9, Q05S05.CrossRefGoogle Scholar
Sellanes, J. and Krylova, E. (2005) A new species of Calyptogena (Bivalvia, Vesicomyidae) from a recently discovered methane seepage area off Concepción Bay, Chile (368S). Journal of the Marine Biological Association of the United Kingdom 85, 969–976.CrossRefGoogle Scholar
Sibuet, M. and Olu, K. (1998) Biogeography, biodiversity and fluid dependence of deep-sea cold-seep communities at active and passive margins. Deep-Sea Research Part II 45, 517–567.CrossRefGoogle Scholar
Smith, E.A. (1906) Natural history notes from the R.I.M.S. Investigator. Series III, No. 10. On Mollusca from the Bay of Bengal and the Arabian Sea. Annals and Magazine of Natural History 7, 245–264.CrossRefGoogle Scholar
Steedman, H.F. (1957) Polyester wax: a new ribboning embedding medium for histology. Nature 179, 1345.CrossRefGoogle Scholar
Stewart, F.J., Young, C.R. and Cavanaugh, C.M. (2008) Lateral symbiont acquisition in a maternally transmitted chemosynthetic clam endosymbiosis. Molecular Biology and Evolution 25, 673–687.Google Scholar
Stuardo, J. and Valdovinos, C. (1988) A new bathyal Calyptogena from off the coast of Central Chile (Bivalvia: Vesicomyidae). Venus: Japanese Journal of Malacology 47, 241–250.Google Scholar
Tunnicliffe, V. (1991) The biology of hydrothermal vents: ecology and evolution. Oceanography and Marine Biology: an Annual Review 29, 319–407.Google Scholar
Vrijenhoek, R.C., Schutz, S.J., Gustafson, R.G. and Lutz, R.A. (1994) Cryptic species of deep-sea clams (Mollusca, Bivalvia, Vesicomyidae) in hydrothermal vent and cold-seep environments. Deep-Sea Research Part II 41, 1171–1189.CrossRefGoogle Scholar
Woodring, W.P. (1925) Miocene mollusks from Bowden, Jamaica. Part I: Pelecypods and Scaphopods. Carnegie Institution of Washington, Publication 366, 1–222.Google Scholar