Locating activity hotspots – areas of higher density, more intense use, or distinct social units – is a prerequisite for answering many questions in animal ecology. However, for many species, carrying out such research from direct observations in tropical habitat is time-consuming and unrealistic for non-habituated animals. This study aimed to locate chimpanzee home ranges from transect nest counts. For validation purposes, 233 line transects were sampled within the home ranges of four habituated social groups of chimpanzees in Taï National Park, Côte d'Ivoire. In total, 373 km of transects were surveyed over 188 days and 683 nests of chimpanzee were recorded. First, we characterized heterogeneity of nest distribution patterns, including variation in density and group size within the area. Second, we used scan statistics, a likelihood-based cluster technique to locate chimpanzee social groups and compared them with the known home range boundaries. Chimpanzee nest distribution was characterized by a positive density and group-size gradient away from the range periphery. Furthermore, nest distribution clusters corresponding to the four groups could be successfully identified, although additional clusters for, for example, low-density areas between social groups seem to be an unavoidable by-product. The approach taken can be extended to a wide spectrum of data stemming from direct observations, camera traps, acoustic or genetic sampling to derive information about structure and patchiness of wild animal populations.

We conducted a study on small-mammal composition, abundance and diversity across altitudinal and vegetational gradients in the Urucum Mountains (from 150 to 1000 m asl) in western Brazil, a complex biogeographic region. Small mammals were collected in 31 sampling units distributed along altitudinal and vegetational gradients (forest and grassland), totalling 18 112 trap-nights for pitfall and 3500 trap-nights for live-trap. Community variation among sampling units was assessed by randomization tests, setting altitude, vegetation, locality and time as factors, and using presence/absence data. Correlation and logistic regression analyses were run for species and diversity along gradients of altitude and vegetation, according to abundance and presence/absence data. Nineteen species (seven marsupial and 12 rodent) and 355 individuals were recorded. The species composition of small mammals differed according to altitude, vegetation type, locality and time. Species diversity varied significantly according to altitude. Species were influenced solely by altitude or vegetation, or by both vegetation and altitude concomitantly. The small-mammal community was divided in two groups according to biogeographic affinities. The grassland group is capable of invading forest habitats. The results are discussed in light of current hypotheses that attempt to explain community variation along altitudinal gradients around the world.

This study investigated the effects of mistletoe infection on N cycling in a semi–arid savanna, south-west Zimbabwe. We established five plots (10 × 10 m) which each included three large canopy-dominant Acacia karroo trees infected by one of three mistletoes (Erianthemum ngamicum, Plicosepalus kalachariensis and Viscum verrucosum) and non-infected A. karroo trees. In each plot, we measured litterfall, litter quality (N, phenolics, tannins and lignin), soil nutrient concentrations and N transformations beneath tree canopies. Soil N, P and Ca were greatest beneath trees infected by P. kalachariensis than beneath non-infected trees. Litterfall and litter N returns were 1.5, 2 and 1.4 times more beneath A. karroo trees infected by E. ngamicum, P. kalachariensis and V. verrucosum, respectively. Mineral N increased with mistletoe infection but did not exceed 20%. Soil N transformations were greater beneath trees infected by E. ngamicum (> 40%), and lower beneath trees infected by P. kalachariensis (<50%) and V. verrucosum (<48%) than beneath non-infected A. karroo trees. Soil N transformations were negatively correlated with condensed tannins, lignin and lignin : N. We conclude that the improved N concentration can increase resource heterogeneity, which may alter the ecosystem structure and functioning in the semi-arid savanna.

We investigated the foraging ecology of 13 species of woodpecker in logged and unlogged lowland rain forest at two forest reserves in West Malaysia (Pasoh Forest Reserve and Sungai Lalang Forest Reserve). The parameters perch diameter and microhabitat/substrate type explained more variation in the data than other parameters, and effectively divided the guild into two groups: (1) ‘conventional’ – species that excavated frequently, used relatively large perches, and foraged on snags and patches of dead wood, and (2) ‘novel’ – species that used smaller perches and microhabitats that are available in tropical forests on a year-round basis (e.g. external, arboreal ant/termite nests and bamboo). These novel resources may explain, in part, the maintenance of high woodpecker diversity in tropical rain forests.

Variation in understorey irradiance is both a cause and consequence of the structure and dynamics of closed-canopy forests, which are also influenced by soil nutrients and water availability. We tested the hypothesis that understorey light regimes differ among four mixed dipterocarp forest types that share the same rainfall, but grow on different soils along an edaphic gradient at one site in Borneo. Based on data from photosynthetically active radiation sensors deployed at 1-m height at 36 locations for 351 sensor-days, we found significant soil-related variation in irradiance. The more productive forest types on clay and fine loam had lower daily photosynthetic photon flux density (PPFD) than those on the more nutrient-depleted and better-drained sandy loam and loam. They also had fewer moderate to high-intensity sunflecks, and a greater proportion of their daily PPFD came from low-intensity light. Understorey irradiance did not, however, monotonically decline with increasing soil resources. Forests on intermediate soils had greater irradiance than those with more and less soil resources, due to steeper slopes. Plant communities arrayed on resource gradients are commonly used to test hypotheses of environmental factors driving their assembly. Our results indicate that consideration of multiple resource dimensions in such tests is critical.

In this paper, we investigate which factors determine tree clustering in Southern African savannas. This was tested by measuring clustering of trees using the T-squared sampling method in plots of the Kruger National Park experimental burning programme in South Africa. Fire return interval is the main treatment in these plots, but also several auxiliary determining parameters like clay content in the soil, diameter of tree canopies, understorey composition, tree species diversity and average annual rainfall were measured while sampling. In the Kruger National Park 48 plots distributed over four different landscape types and with three different burning treatments (never, once every 3 y and annually) were sampled. First, we related the clustering of trees to these environmental variables. When looking at the most abundant species in each plot, the analysis revealed that clustering is mainly correlated with clay content in the soil. This analysis also showed that fire frequency had a positive effect on the clustering of tree species that are not very abundant. We suggest that less abundant species might be less resistant to fire and therefore adopt a mechanism of clustering to exclude grass fires under their canopy. Finally, we tested the effect of clustering on the impact of fire on trees by analysing the relationship between the distance of a tree to its nearest neighbour and its canopy diameter. We found that clustering reduces the damaging effect of fire on trees. Our study contributes to understanding of savanna functioning by showing which processes are relevant in the distribution of savanna trees.

Circadian use of time is an important, but often neglected, part of an animal's niche. We compared the activity patterns of the Neotropical otter Lontra longicaudis in two different areas in Brazil using camera traps placed at the entrance of holts. We obtained 58 independent photos in the Atlantic Forest (273 camera trap-days) and 46 photos in Pantanal (300 camera trap-days). We observed different kernel density probabilities on these two areas (45.6% and 14.1% overlap between the 95% and 50% density isopleths respectively). We observed the plasticity in Neotropical otter activity behaviour with different activity patterns in the two areas. In the Pantanal, the Neotropical otter selected daylight (Ivlev = 0.23) and avoided night (Ivlev = −0.44), while in the Atlantic Forest it selected dawn (Ivlev = 0.24) and night (Ivlev = 0.14), avoiding daylight (Ivlev = −0.33). We believe that this pattern can be due to human activity or shifts in prey activity.

Hornbills are important dispersers of a wide range of tree species. Many of these species bear fruits with large, lipid-rich seeds that could attract terrestrial rodents. Rodents have multiple effects on seed fates, many of which remain poorly understood in the Palaeotropics. The role of terrestrial rodents was investigated by tracking seed fate of five hornbill-dispersed tree species in a tropical forest in north-east India. Seeds were marked inside and outside of exclosures below 6–12 parent fruiting trees (undispersed seed rain) and six hornbill nest trees (a post-dispersal site). Rodent visitors and seed removal were monitored using camera traps. Our findings suggest that several rodent species, especially two species of porcupine were major on-site seed predators. Scatter-hoarding was rare (1.4%). Seeds at hornbill nest trees had lower survival compared with parent fruiting trees, indicating that clumped dispersal by hornbills may not necessarily improve seed survival. Seed survival in the presence and absence of rodents varied with tree species. Some species (e.g. Polyalthia simiarum) showed no difference, others (e.g. Dysoxylum binectariferum) experienced up to a 64% decrease in survival in the presence of rodents. The differing magnitude of seed predation by rodents can have significant consequences at the seed establishment stage.

Striga asiatica (Scrophulariaceae) is an obligate root hemiparasite of mainly C4 grasses (including cereals). It is the most widespread of the 42 Striga species occurring in many semi-tropical, semi-arid regions of mainly the Old World. Examination of herbaria specimens revealed that S. asiatica has a wider geographical distribution, is present at higher altitudes and occurs in a more diverse range of habitats than previously reported. The host range is also larger than previously reported and is likely to include a large number of C3 plants. Morphology of examined specimens revealed variation in size and corolla colour suggesting the existence of ecotypes. Climate may exert a significant influence on the distribution of S. asiatica given the diversity of potential host plants and their distribution beyond the current recorded range of S. asiatica.

Primates commonly consume leaves that are high in protein but low in digestion-inhibiting fibre. Due to the fact that mature leaves do not meet these criteria, they are typically avoided and many leaf-eating primates select for leaves high in protein and low in fibre leading to the theory that food selection is based on protein maximization. However, feeding records for a population of black howler monkey (Alouatta pigra) in Monkey River, Belize, collected over a 5-y period, together with synchronous phenological data, indicate that this population does not meet the expectation and actually prefer mature leaves. This study aims to describe the nutritional composition of the food supply and investigate the possibility that, rather than to maximize protein ingestion, mature leaves are eaten to balance nutrient intake. Macronutrient analyses (moisture, lipids, protein, NDF, ADF and simple sugars) were conducted on a sample of 96 plant samples from 18 food species of this population of black howler. Results reported here show that mature leaves eaten by howlers in this forest contain sufficient protein to meet minimum metabolic requirements (range: 11.6–24%; mean: 16.4% ± 3.8%) and have significantly higher concentrations of simple sugars than young leaves (means of 7.2% ± 2.7% vs. 4.4% ± 2.3% respectively). Thus, it appears that mature leaf ingestion is likely serving to balance energy and protein intake. This result may be due to the disruptive effects of a hurricane in 2001 that resulted in a loss of 80% of the howler population, changed forest composition and may have affected plant chemistry. Despite this, the data reported here suggest that the accepted view that mature leaves are simply fallback foods for primates, eaten only in times of preferred food scarcity, may have to be revised.

Many plant species in tropical dry forests partly base their ability to persist after disturbance on resprouting. Yet little is known if this ability can be affected by the intensity and seasonality of disturbance and whether the amount of resources (starch, N, P) stored in the taproot may constrain this response. We investigated resprouting after experimental clipping or burning, applied before or after the dry season and repeatedly in Acacia pennatula individuals in wooded rangelands of North-West Nicaragua. Each treatment was applied to 12 trees and replicated in six plots. One year after the onset of the experiment, survival and biomass recovery were significantly lower in burned than in clipped individuals (78% ± 4% and 75.3 ± 8.0 g vs. 94% ± 2% and 79.1 ± 6.8 g; mean ± SE). Whatever the disturbance applied, trees disturbed after the dry season significantly showed the lowest survival, growth and concentration of N and P. These results suggest that resprouting in dry tropical species may be constrained by intense disturbances (e.g. burning) but especially if they occur towards the end of the dry season. This phenological constraint could be due to the reduced availability of N and P as this dry season progresses.

Hemiepiphytic plants grow for part of their life as true epiphytes, then become terrestrial through the production of aerial roots that grow from the canopy to the ground. Long-term measurement of growth, dieback and mortality of aerial roots of hemiepiphytic plants in a lower montane moist tropical forest in western Panama was used to elucidate life-history strategies of hemiepiphytes from two families. The fates of 156 aerial roots of five species of Clusiaceae and Araceae were followed for 10 mo. Some roots were cut to experimentally study the effect of injury on resprouting and survival. Aerial roots of Araceae grew more than twice as fast as those of Clusiaceae but had a much greater mortality rate. Roots of both families grew much faster during the wet than dry season. Even for the fastest growing roots, growth and survival models suggest that only 18% of Araceae roots were likely to survive long enough to reach the ground from a branch 10 m high, whereas 87% of roots of Clusiaceae were likely to do so. This suggests that only those Araceae hemiepiphytes that produce a large number of aerial roots or are located close to the ground are likely to reach the soil.

Germination of Acacia tortilis seeds strongly depends on micro-site conditions. In Lake Manyara National Park, Tanzania, Acacia tortilis occurs abundantly in recently abandoned arable fields and in elephant-mediated gaps in acacia woodland, but does not regenerate in grass swards or beneath canopies. We examined the germination of Acacia tortilis using field and laboratory experiments. Seeds placed on top of the soil rarely germinated, while seeds covered with elephant dung or buried under the soil surface had a germination success between 23–43%. On bare soil 39% of both the dung-covered and buried seeds germinated, in perennial grass swards 24–43%, and under tree canopies 10–24% respectively. In laboratory experiments, seed water absorption correlated positively with temperature up to 41 °C, while subsequent germination was optimal at lower (21–23 °C) temperatures. Seeds that had absorbed water lost their viability when kept above 35.5 °C. The absence of light did not significantly influence germination success. Acacia tortilis does not actively disperse its seeds, but regeneration outside tree canopies was substantial. The regeneration potential thus strongly depends on the physiognomy of the vegetation.

This study is the first to compare bird communities across different sites within the same large continuous neotropical primary forest area. The objectives were to document bird distribution patterns, the spatial variability of specific abundances and the between-site turnover in species compositions. I censused 268 forest-interior species, 39 raptors and 135 natural-gap species in 20 widely spaced, c. 2000-ha sites in the interior of French Guiana, divided into three main zones. At least 59% of species had a very low abundance index and/or rate of occurrence among sites and only 1% were widespread dominants. Beta diversity was an important determinant of regional species richness. There was an average 29% species turnover between sites and 7% between regions, as well as a lack of nested-subset structure among communities and a random occurrence of pairs of similar congeners. At the country scale, only one species had a truly restricted geographical range, independent of habitat availability, but at a local scale, many species had uneven distributional gaps (36% present at < 50% of sites with suitable habitat). Among sites, abundance or incidence variability had no definite pattern. Frequency of occurrence in suitable patches decreased with increasing natural fragmentation of habitats. There were significant relationships between habitat selection and abundance or frequency of occurrence but not with diet or body size. Few species exhibited consistent geographical trends along the north-south gradient of decreasing rainfall. Guianan endemics tended to be widespread within the country. Several seasonal movements and inter-annual population fluctuations were documented. Rarity had different forms, but no general ecological correlates. Nearly half of rare species were associated with various types of forest gaps or edges, and were consequently more abundant outside the forest zone, i.e. in grasslands or clearings. Local occurrences and abundances seem to be the result of highly species-specific factors, and hence any general determinant of community structure may be obscured by specific reactions in such species-rich, heterogeneous and complex tropical rain-forest communities.

Primary seed dispersal of many rain-forest seeds occurs through defecation by mammals. Dung beetles are attracted to the defecations and through their dung-processing behaviour these insects change the initial pattern of seed deposition. Final seed deposition patterns, i.e. where and how seeds are deposited after dung beetle activity has taken place, may strongly depend on seed size. In this study we addressed the following question: Do different sizes of seeds have different deposition patterns following dung beetle processing? We conducted a field experiment in lowland Amazonian rain forest in Brazil using 200-g dung-piles containing seed mimics of three sizes: 3.5, 8.6 and 15.5 mm long. Seed deposition condition after dung beetle activity was dependent on seed size. Small seeds were more often buried in beetle tunnels, while medium and large seeds more often remained on the soil surface, either clean or still covered by dung. A low proportion of seeds of all sizes remained on the soil surface covered by loose soil excavated by dung beetles. We speculate that the latter deposition pattern, though not very frequent, might be highly favourable for both seed survival and seedling establishment.

Differences in growth patterns between the sexes of the gracile mouse opossum Gracilinanus microtarsus and the consequences for home range size were investigated in a savanna habitat (cerrado) of south-eastern Brazil. A total of 51 juvenile individuals of Gracilinanus microtarsus was monitored using capture–mark–recapture from November 2005 to August 2006. The increase in body mass of gracile mouse opossums was described using the Gompertz growth model. Male gracile mouse opossums grew faster than females (dimorphic ratio of 1.5). Home range size, estimated with the minimum convex polygon method, was positively related to body mass. Model selection using Akaike's Information Criterion (AICc) and incorporating body mass, sex and season as independent variables showed that the best-supported model describing variance in home range sizes included only body mass. Our data suggest that a greater body mass gain in juvenile males is probably the proximate cause of sexual dimorphism in adult gracile mouse opossums and that energetic needs required for growth have a greater influence in home range size.

Mass-flowering plant species are often pollinated by social bees that are able to use the abundant resource by recruiting workers from their colonies. In this study we surveyed pollinators on the mass-flowering perennial crop coffee (Coffea arabica) in its native range in Ethiopia. Previous studies in areas where coffee is introduced often find the social honeybee, Apis mellifera, to be the dominant pollinator. In those areas, the bee-species composition visiting coffee varies with a higher bee diversity closer to forest or in less modified habitats. We surveyed pollinators of coffee under different shade-tree structures, by collecting hoverflies and bees landing on coffee flowers in 19 sites in south-west Ethiopia. We found the native honeybee (A. mellifera) to be the dominant visitor of coffee flowers in all sites. Honeybee abundance was not affected by the local shade-tree structure, but was positively affected by the amount of coffee flower resources. Other pollinators were positively affected by complex shade-tree structures. To conclude, the honeybee is clearly the dominant pollinator of coffee in Ethiopia along the whole shade-tree structure gradient. Its high abundance could be a consequence of the provision of traditional bee hives in the landscape, which are colonized by wild swarming honeybees.